Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq508016 134 2e-26 >seq508016 Length=803 Score = 134 bits (148), Expect = 2e-26 Identities = 357/544 (66%), Gaps = 6/544 (1%) Strand=Plus/Minus Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676 ||| || ||||| || || || | ||| ||||||| || |||||||| | ||| ||||| Sbjct 795 AATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATAT 736 Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 | | ||| ||| ||||| || || ||||| || |||||| |||| | | ||| Sbjct 735 AGCACAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTC 676 Query 33737 TCCATAAC---CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 || | ||| | ||| ||||| | | ||||| | |||||||| | || Sbjct 675 CGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAAC 619 Query 33794 ACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 33853 ||| || || || || | || || | | ||||||| | | || || | || Sbjct 618 ACAGGGGATAGTCTCAACTGCGCGGAACAATCTGCTTTTTTCTTCAGAGTCCTTGATGTA 559 Query 33854 AGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCC 33913 | || | | ||||| ||||| || ||||| ||||||||||| || || || || || Sbjct 558 CGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCC 499 Query 33914 GTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTC 33973 ||||||| | ||||| | || || |||||| | || | | | |||| ||||| Sbjct 498 GTAGAAAGCACGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTC 439 Query 33974 ATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 34033 || || || || ||| || ||||| || | ||||| | || |||| |||| Sbjct 438 TAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTC 379 Query 34034 GTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGT 34093 | | || ||||| | | ||| | | | ||||| ||||| ||| ||||| || | || Sbjct 378 GCCGGGAGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGT 319 Query 34094 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 ||| || || || || ||||| ||||| | ||| || | | ||||| |||||||| Sbjct 318 CCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAA 259 Query 34154 AATA 34157 ||| Sbjct 258 CATA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622499064378960