Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq14524 105 6e-18 seq908713 89.7 5e-13 >seq14524 Length=135311 Score = 105 bits (116), Expect = 6e-18 Identities = 168/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 |||||| ||||||||| || ||||||||||| ||||||||||| |||||||| || Sbjct 88898 TTGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTG 88957 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| ||||| | || ||| || | |||| | ||| || || | ||| Sbjct 88958 AGACATCAAATGGTATGTCTTGATGACAGATTCAACATCATCCTTGTGGATCCCAACAGA 89017 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA---TTATTCTGTTTAAGTAG 38576 ||| ||||| ||||| |||||||| ||||||| | |||| | | || |||||| || Sbjct 89018 TACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATC--TTTAAG-AG 89074 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || | || | ||||| | ||||| ||| ||| | | ||||| || ||| Sbjct 89075 GTAAGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATAT 89132 >seq908713 Length=735 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| || ||||| | || ||||| ||||| |||||||| ||| Sbjct 575 TTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTG 634 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| ||| || | || || || |||||| | ||| || || | ||| Sbjct 635 AGACATCAAATGATAAGTCTTGATGGCAGATTCGATATCATCCTTGTGGATTCCAACAGA 694 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 || ||||| | |||||||||||| ||||||| Sbjct 695 AACTCTCATCAACATATGTTGTGGCCTTTCTA 726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463080500828080