Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq508016 147 3e-30 >seq508016 Length=803 Score = 147 bits (162), Expect = 3e-30 Identities = 362/545 (66%), Gaps = 8/545 (1%) Strand=Plus/Minus Query 36193 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 36252 ||| || ||||| || || || | ||| ||||||| || |||||||| | ||| ||||| Sbjct 795 AATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATAT 736 Query 36253 GGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 36311 | | || | | | |||||||| ||||| ||||| || ||||| |||| | | || Sbjct 735 AG-CACAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCT 677 Query 36312 CTCCATAAC---CGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 36368 | || | ||| || ||| ||||| | | ||||| | |||||||| | | Sbjct 676 CCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAA 620 Query 36369 CACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 36428 |||| || || ||||| | || || | | ||||||| | | || || | | Sbjct 619 CACAGGGGATAGTCTCAACTGCGCGGAACAATCTGCTTTTTTCTTCAGAGTCCTTGATGT 560 Query 36429 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 36488 | | || | | ||||| ||||| || ||||| ||||||||||| || ||||| || | Sbjct 559 ACGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGC 500 Query 36489 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTT 36548 |||||||| | ||||| | || || |||||| | || | | | |||| |||| Sbjct 499 CGTAGAAAGCACGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTT 440 Query 36549 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 36608 | || || ||||| ||| || ||||| || | ||||| | || |||| ||| Sbjct 439 CTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTT 380 Query 36609 CGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 36668 || || ||||| | | ||| | | | ||||| ||||| ||| ||||| || | | Sbjct 379 CGCCGGGAGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAG 320 Query 36669 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 36728 |||| || || || || ||||| ||||| | ||| || | | ||||||||||| | Sbjct 319 TCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGA 260 Query 36729 AAATA 36733 | ||| Sbjct 259 ACATA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650524774473880