Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq22395 107 2e-18 seq21203 95.1 1e-14 seq20754 95.1 1e-14 seq10275 95.1 1e-14 seq914224 87.8 2e-12 seq24017 84.2 2e-11 seq1350 84.2 2e-11 seq188498 82.4 7e-11 >seq22395 Length=162664 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| ||| ||||| ||||||| || ||||| Sbjct 110936 CCACCACGGAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGAAAATTGTAATCTGCG 110995 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || ||||||||||| || ||| |||||| |||||||||||| || || Sbjct 110996 AGAGTACGCCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGATCTGGTGGA 111055 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | |||| | | || | ||||| | ||| || Sbjct 111056 ATACCTTCTTTGTC-CTGAATTTTGGCTTTAACATTGTCGATCGTGTCTGAACTCTCAAC 111114 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| |||| || || || ||||| ||||| Sbjct 111115 TTCGAGAGTTATAGTCTTGCCAGTCAGGGTCTTCACAAATATCTGCAT 111162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | ||| ||||| |||||||| || ||||| Sbjct 27318 CCACCACGGAGACGAAGAACAAGGTGGAGCGTTGACTCCTTTTGAATATTGTAATCCGCG 27377 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || ||||||||||| || ||| |||||| |||||| ||||| || || Sbjct 27378 AGAGTCCGTCCA-TCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 27436 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || |||||| || | | || | ||||| | | || || Sbjct 27437 AATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGTCCGAGCTTTCGAC 27496 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| ||||| || || |||||||| Sbjct 27497 TTCCAATGTGATTGTCTTCCCAGTCAAGGTTTTAACAAAAATTTGCAT 27544 >seq21203 Length=98475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || || ||||| |||||||| ||||| || || | | || Sbjct 50958 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 51017 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 51018 TTCCAGCTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 51077 >seq20754 Length=265263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||||||||| | |||| ||| ||||| || || ||||||||||| | ||| || Sbjct 216160 AAACGCAAAACCAGATGAAGCGTCGACTCCTTCTGTATGTTATAATCAGCAAGTGTCCTT 216219 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| || || || || ||| | |||| || ||||| || || || || ||||| Sbjct 216220 CCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCTGGGGGAATCCCTTCC 216279 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| |||| | || | | || | |||||| | ||| ||||| | ||| Sbjct 216280 TTGTC-TTGAATTTTGGCCTTCACGTTATCAATTGTGTCCGAACTCTCAACCTCCAAGGT 216338 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || ||||| || || ||||| |||||||| Sbjct 216339 GATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 216377 >seq10275 Length=89473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || ||||||| || || || ||||| ||||| || ||| Sbjct 10897 GCCTCCTCTAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGC 10956 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || |||||||||||| || || || |||||| | |||||| || || || Sbjct 10957 TAGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGGTCCGGTGG 11016 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | || | ||| | | || | ||||||| | || | Sbjct 11017 GATTCCTTCTTTGTC-CTGAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAA 11075 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 11076 CCTCAAGGGTTATGGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCAT 11124 >seq914224 Length=857 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || || || || ||||| |||||| | |||||||| ||||| ||||||||||| Sbjct 661 TCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTA 602 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | || | ||| |||| ||| ||||||| ||| | Sbjct 601 TCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAACCTCAAGGGTAATA 542 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| |||||||| || || |||||| Sbjct 541 GTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCATA 506 >seq24017 Length=104150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | ||||| || || || ||||| ||||| || ||| Sbjct 2849 CCACCACGTAGACGGAGGACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCA 2908 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| |||||| | |||||||||||||| Sbjct 2909 AGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCGGGAGGG 2968 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | ||||||| ||| || Sbjct 2969 ATTCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 3027 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || ||||| | ||| ||||| || |||||||| Sbjct 3028 CTCGAGAGTAATGGTTTTTCCGGTAAGCGTCTTTACAAAGATTTGCAT 3075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | ||||| || || || ||||| ||||| || ||| Sbjct 5772 CCACCACGTAGACGGAGGACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCA 5831 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| |||||| | |||||||||||||| Sbjct 5832 AGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCGGGAGGG 5891 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | ||||||| ||| || Sbjct 5892 ATTCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 5950 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || ||||| | ||| ||||| || |||||||| Sbjct 5951 CTCGAGAGTAATGGTTTTTCCGGTAAGCGTCTTTACAAAGATTTGCAT 5998 >seq1350 Length=82824 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||| | || | || |||||||| |||||||| ||||| Sbjct 8224 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 8283 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| ||| || || || || || || ||| ||||||| | ||||| || ||||| Sbjct 8284 CAATGTCCTCCCATCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGG 8343 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | |||| |||| | || | || || | || | Sbjct 8344 AATACCTTCCTTGTCT-TGAATCTTTGCCTTTACATTGTCAATAGTATCTGAACTTTCAA 8402 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| ||| | ||||||||||| | || || || || || |||||| Sbjct 8403 CTTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATA 8452 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || || || | || ||||| || || |||||||| || | || || Sbjct 8006 AAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCAAGAGTCCTG 8065 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || || |||||||||||| |||||| ||| ||||| || || || || || || Sbjct 8066 CCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTCC 8125 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | |||| ||| | | || | || || | ||| ||||| | || Sbjct 8126 TTGTC-TTGAATCTTTGCTTTGACATTGTCAATGGTATCAGAACTCTCAACCTCCAAAGT 8184 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| || || || || || ||||| Sbjct 8185 TATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 8223 >seq188498 Length=2629 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | ||||| || || ||||| |||||||||||||| Sbjct 2215 GCCACCACGGAGACGAAGAACCAGGTGAAGAGTTGATTCTTTCTGAATGTTATAATCAGC 2274 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || || ||||| ||||||||| | ||||| | ||||| || || || Sbjct 2275 AAGGGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGG 2334 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | |||| || | | || | || || | | ||| | Sbjct 2335 AATACCCTCCTTGTC-CTGAATCTTTGCCTTCACATTGTCAATGGTATCCGAGCTCTCAA 2393 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||||| || ||||| || || || || || ||||| Sbjct 2394 CCTCCAGGGTGATCGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 2442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490299692914400