Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq508016 138 2e-27 >seq508016 Length=803 Score = 138 bits (152), Expect = 2e-27 Identities = 353/535 (66%), Gaps = 2/535 (0%) Strand=Plus/Minus Query 50002 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 50061 ||||| || || || | ||| ||||||| || |||||||| | ||| ||||| | | || Sbjct 788 TCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACA 730 Query 50062 AATGAC-CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA 50120 | | |||||||| || || ||||| || ||||| ||||| | | ||| || | Sbjct 729 GAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAA 670 Query 50121 ACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 50180 | || | | ||||| | | ||||| | |||||||| | ||||| || || Sbjct 669 TGTTTCGGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGAT 610 Query 50181 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 50240 || || | || || | | ||||||| | | || || | || | || | Sbjct 609 AGTCTCAACTGCGCGGAACAATCTGCTTTTTTCTTCAGAGTCCTTGATGTACGACTCTAG 550 Query 50241 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300 | ||||| ||||| || ||||| ||||||||||| || || || || ||||||||| Sbjct 549 AAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGC 490 Query 50301 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTAT 50360 | ||||| | || || |||||| | || | | | |||| ||||| || || Sbjct 489 ACGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGAT 430 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 ||||| ||| || ||||| || | ||||| | || ||||| ||||| ||| || Sbjct 429 GCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGAGT 370 Query 50421 TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 ||| | | ||| | | | ||||| ||||| ||| ||||| || | ||||| || || Sbjct 369 TAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGA 310 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 || || ||||| ||||| | ||| || | | ||||| |||||||| ||| Sbjct 309 GGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709922453695480