Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1350 89.7 4e-13 seq53084 84.2 2e-11 >seq1350 Length=82824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||||| ||| |||||| || | |||||||| | Sbjct 8453 CCGCCACGAAGGCGAAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 8512 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | ||| ||||| ||||||||||| | |||||||| | || Sbjct 8513 AGAGTTCTACCATCTTCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGA 8572 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | ||||| || ||| ||||| ||| |||||| Sbjct 8573 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTC-TGAGCTCTCGAC 8631 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| ||||| ||||| || || ||||| ||||| |||||||| Sbjct 8632 CTCAAGCGTAATAGTCTTTCCAGTCAGGGTTTTGACAAAGATTTGCAT 8679 >seq53084 Length=45269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| |||| ||||| || | |||||||| | Sbjct 6807 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 6748 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||||| ||||| ||||| | ||||| || || | || Sbjct 6747 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 6688 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | ||||||| | ||||| Sbjct 6687 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACC 6628 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || || ||||| |||||||| || || ||||| ||| Sbjct 6627 TCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 6577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377048840581206