Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq508016 152 7e-32 >seq508016 Length=803 Score = 152 bits (168), Expect = 7e-32 Identities = 363/545 (67%), Gaps = 8/545 (1%) Strand=Plus/Minus Query 42100 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 42159 ||| || ||||| || || || | ||| ||||||| || |||||||| | ||| ||||| Sbjct 795 AATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATAT 736 Query 42160 AGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 42218 || | || | | | |||||||| || || ||||| || ||||| |||| | | || Sbjct 735 AG-CACAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCT 677 Query 42219 CTCCATAAC---CGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 42275 | || | ||| || ||| ||||| | | ||||| | |||||||| | | Sbjct 676 CCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAA 620 Query 42276 CACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 42335 |||| || || || || | || || | | ||||||| | | || || | | Sbjct 619 CACAGGGGATAGTCTCAACTGCGCGGAACAATCTGCTTTTTTCTTCAGAGTCCTTGATGT 560 Query 42336 ATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATC 42395 | | || | | ||||| ||||| || ||||| ||||||||||| || || || || | Sbjct 559 ACGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGC 500 Query 42396 CGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTT 42455 |||||||| | ||||| | ||| || |||||| | || | | | |||| |||| Sbjct 499 CGTAGAAAGCACGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTT 440 Query 42456 CGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 42515 | || || ||||| ||| || ||||| || | ||||| | || |||| ||| Sbjct 439 CTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTT 380 Query 42516 CGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCG 42575 || | || |||| | | ||| | | | ||||| ||||| ||| ||||| || | | Sbjct 379 CGCCGGGAGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAG 320 Query 42576 TCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGA 42635 |||| || || ||| || ||||| ||||| | ||| || | | ||||||||||||| Sbjct 319 TCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGA 260 Query 42636 AAATA 42640 | ||| Sbjct 259 ACATA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663340503771320