Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1350 98.7 1e-15 seq22395 95.1 1e-14 seq21203 91.5 1e-13 seq10275 89.7 5e-13 seq39326 87.8 2e-12 seq20754 86.0 6e-12 seq19239 84.2 2e-11 >seq1350 Length=82824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | ||| | ||| | || || ||||| || ||||||||||| Sbjct 8224 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 8283 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| ||| || || ||||| || || ||| ||||||| | ||||| || ||||| Sbjct 8284 CAATGTCCTCCCATCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGG 8343 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| ||| |||| | || | || || | ||| || Sbjct 8344 AATACCTTCCTTGTCTTGAATCTTTGCCTTTACATTGTCAATAGTATCTGAACTTTCAAC 8403 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || | ||||||||||| | ||| || || || || |||||| Sbjct 8404 TTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATA 8452 >seq22395 Length=162664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | |||| || || || ||||| | |||||||| Sbjct 110936 CCACCACGGAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGAAAATTGTAATCTGCG 110995 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | || ||||| ||||| || ||| |||||| |||||||||||| || || Sbjct 110996 AGAGTACGCCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGATCTGGTGGA 111055 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | || | |||||| | || ||| Sbjct 111056 ATACCTTCTTTGTCCTGAATTTTGGCTTTAACATTGTCGATCGTGTCTGAACTCTCAACT 111115 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| |||| || || || ||||| ||||| Sbjct 111116 TCGAGAGTTATAGTCTTGCCAGTCAGGGTCTTCACAAATATCTGCAT 111162 >seq21203 Length=98475 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | |||| || |||||||| || ||||||||||| || || | | || Sbjct 50958 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 51017 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| || ||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 51018 TTCCAGCTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 51077 Query 143092 --GGTAA 143096 ||||| Sbjct 51078 CTGGTAA 51084 >seq10275 Length=89473 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| ||||| || || || ||||||||||| Sbjct 10442 CCGCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCG 10501 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || || ||| ||||||| | |||||| ||||| || Sbjct 10502 AGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCGGGTGGG 10561 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||||| || | | || | ||||| | | ||| ||| Sbjct 10562 ATTCCCTCTTTATCCTGGATTTTCGCCTTAACGTTATCAATAGTGTCGGAGCTTTCAACT 10621 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 10622 TCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 10668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | ||| | || || |||| || ||||| ||||| |||||||| ||| Sbjct 10897 GCCTCCTCTAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGC 10956 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||||||| || || || || |||||| | |||||| || || || Sbjct 10957 TAGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGGTCCGGTGG 11016 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| || || | | || | ||||| | | ||| || Sbjct 11017 GATTCCTTCTTTGTCCTGAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAAC 11076 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || || | ||||| ||||| || ||||| Sbjct 11077 CTCAAGGGTTATGGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCAT 11124 >seq39326 Length=18362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || || | ||| | ||| || |||| ||||| || || || ||||||||||| || Sbjct 6630 CCCCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGC- 6688 Query 143017 CATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | | | |||| ||||| | || ||||||||| |||||| | |||||||| || Sbjct 6689 --TAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGT 6746 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 6747 GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATAGTGTCAGAGCTTTCA 6806 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 6807 ACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 6856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | || || |||| || ||||| || || ||||||||||| || Sbjct 6857 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGC 6916 Query 143016 TCATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | | | |||| ||||| | || ||||||||| |||||| | |||||||| || Sbjct 6917 ---TAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGG 6973 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || ||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 6974 TGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATAGTGTCAGAGCTTTC 7033 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 7034 AACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 7084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | || || |||| || ||||| || || ||||||||||| || Sbjct 7085 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGC 7144 Query 143016 TCATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | | | |||| ||||| | || ||||||||| |||||| | |||||||| || Sbjct 7145 ---TAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGG 7201 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || ||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 7202 TGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATAGTGTCAGAGCTTTC 7261 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 7262 AACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 7312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | || || |||| || ||||| || || ||||||||||| || Sbjct 7313 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGC 7372 Query 143016 TCATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | | | |||| ||||| | || ||||||||| |||||| | |||||||| || Sbjct 7373 ---TAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGG 7429 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || ||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 7430 TGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATAGTGTCAGAGCTTTC 7489 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 7490 AACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 7540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | || || |||| || ||||| || || ||||||||||| || Sbjct 7541 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGC 7600 Query 143016 TCATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | | | |||| ||||| | || ||||||||| |||||| | |||||||| || Sbjct 7601 ---TAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGG 7657 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || ||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 7658 TGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATAGTGTCAGAGCTTTC 7717 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 7718 AACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 7768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | || || |||| || ||||| || || ||||||||||| || Sbjct 7769 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGC 7828 Query 143016 TCATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | | | |||| ||||| | || ||||||||| |||||| | |||||||| || Sbjct 7829 ---TAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGG 7885 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || ||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 7886 TGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATAGTGTCAGAGCTTTC 7945 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 7946 AACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 7996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | || || |||| || ||||| || || ||||||||||| || Sbjct 7997 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGC 8056 Query 143016 TCATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | | | |||| ||||| | || ||||||||| |||||| | |||||||| || Sbjct 8057 ---TAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGG 8113 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || ||||| ||||| ||| || || | | || | ||||| | | ||| Sbjct 8114 TGGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATAGTGTCAGAGCTTTC 8173 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 8174 AACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 8224 >seq20754 Length=265263 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | ||||||||||| | ||||| || || || || |||||||| ||||| Sbjct 216151 CCTCCCCTCAAACGCAAAACCAGATGAAGCGTCGACTCCTTCTGTATGTTATAATCAGCA 216210 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| ||||| || || ||| | |||| || ||||| || || || Sbjct 216211 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCTGGGGGA 216270 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | || | ||||||| || || Sbjct 216271 ATCCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTATCAATTGTGTCCGAACTCTCAACC 216330 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || ||||| || || ||||| |||||||| Sbjct 216331 TCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 216377 >seq19239 Length=237608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| | |||| ||| |||||||| || || |||||||| | Sbjct 131811 CCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 131870 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| | ||||| |||||| | ||||| | ||||| || |||| Sbjct 131871 AGAGT--TCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAG 131928 Query 143076 GTATGCCTTCTTTGTC--GGTAA 143096 |||| ||||||||||| ||||| Sbjct 131929 GTATCCCTTCTTTGTCCTGGTAA 131951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501122848308240