Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq20754 95.1 1e-14 seq10275 89.7 4e-13 >seq20754 Length=265263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||||||||||||||| || | || | ||||| Sbjct 215940 CACAAGGTGGAGTGTGGATTCCTTTTGAATATTGTAATCTGCAAGGGTGCGCCCATCCTC 215999 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | || || ||||||||||| || | || ||||| || Sbjct 216000 CAGCTGCTTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTG 216059 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||| || |||| ||| | || ||||| || Sbjct 216060 AATTTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTT 216119 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| |||||||||||||| || ||||| Sbjct 216120 TCCTGTCAAAGTTTTGACAAATATCTGCAT 216149 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || |||||||| |||||||||||||| | || | ||||||||||| ||||| Sbjct 160361 GTGGATTCCTTTTGGATATTGTAATCCGCAAGGGTACGCCCATCCTCCAGCTGCTTACCA 160420 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||| | || || | || |||||||| |||||||| || Sbjct 160421 GCAAACATGAACCTCTGCGGGTCTGGTGGGATCCCTTCTTTGTCCTCAATTTTCGCCTTC 160480 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||| ||| |||| ||| | || ||||| || ||||| ||||| Sbjct 160481 ACATTATCTATAGTGTCGAAGCTCTCCACTTCTAAAGTTATGGTCTTCCCTGTCAAAGTG 160540 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 160541 TTGACAAATATCTGCAT 160557 >seq10275 Length=89473 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| ||||| |||||||| || | ||| | || |||| || Sbjct 10009 GTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTG 10068 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || |||||| | || || |||||||||||| ||| | ||||| ||||| ||| || Sbjct 10069 CTTTCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTT 10128 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | | |||||| | ||| || | || |||||||| || || Sbjct 10129 AGCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGT 10188 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 10189 CAACGTCTTCACAAAAATCTGCAT 10212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || |||||||| || || |||||||| || | ||| | | || || Sbjct 10231 CACAAGGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCTTC 10290 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||||||| ||| |||| | ||||||||||| || | || || ||||| Sbjct 10291 CAACTGTTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 10350 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 ||| || || || | | ||| ||| | ||| || || ||| | ||| || || Sbjct 10351 AATCTTAGCCTTGACATTGTCGATAGT---GTCAGAGCTTTCAACTTCAAGGGTGATTGT 10407 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || |||| ||||||||||| || ||||| Sbjct 10408 TTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 10440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409875862094158