Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq22395 116 3e-21 seq20754 96.9 2e-15 seq914224 82.4 5e-11 >seq22395 Length=162664 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAA 43988 ||| ||||||||||||||||| | | || ||| |||| |||||||| || || |||| Sbjct 110743 CTCCTTTTGAATATTATAATCTGCCAGAGTG-CGCCCATCTTCCAATTGCTTCCCCGCAA 110801 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | |||| || ||| |||||| | || | |||||| |||||| |||||| || || Sbjct 110802 AAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACAT 110861 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || ||| ||| || | ||| || || | ||||||||||| ||||| || || || | Sbjct 110862 TATCAATAGTGTCCGAGCTCTCAACTTCCAATGTAATTGTTTTCCCGGTCAAGGTTTTAA 110921 Query 44109 CAAATATTTGCAT 44121 |||| |||||||| Sbjct 110922 CAAAGATTTGCAT 110934 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || ||||| ||| ||||||| ||| ||||| | |||| |||| || | ||| Sbjct 110960 TGAAGCGTTGACTCCTTTTGAAAATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGT 111019 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTT 44037 ||||||||||| ||||| |||||||| || | || | ||||||||| | ||||| ||| Sbjct 111020 TTTCCTGCAAAGATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTGTCCTGAA--TTT 111077 Query 44038 TTGTTTGACCATAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGG 44096 | | || | ||| | | | || |||| ||| || |||| || || || || || | Sbjct 111078 TGGCTTTAACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAG 111137 Query 44097 TTAAAGTCTTCACAAATATTTGCAT 44121 | | |||||||||||||| ||||| Sbjct 111138 TCAGGGTCTTCACAAATATCTGCAT 111162 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAA 43989 || ||||||||||||||||| | | | | || ||| ||||||||||| |||||||| Sbjct 110288 TCCTTTTGAATATTATAATC-TGCGAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAA 110346 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| | |||||||| | || | ||| || ||||| || || || || | Sbjct 110347 AATCAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGTATCTTGGCCTTCACATT 110406 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| ||||| | |||||| || | ||| ||||| || || || ||||||||||| Sbjct 110407 ATCAATGGTATCGGAACTCTCCACCTCCAACGTTATTGTCTTCCCCGTCAAAGTCTTCAC 110466 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 110467 AAAGATCTGCATG 110479 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| | || | || || ||| || || || || |||||||| Sbjct 27090 CCACCTCTCAATCTGAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCC 27149 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || ||||| || || || || |||| || |||||||| | || Sbjct 27150 AGTGTTCTTCCATCTTCTAATTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGCGGG 27209 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| |||||| |||||| || || || ||| || || | ||| || Sbjct 27210 ATACCTTCCTTATCTTGGATTTTTGCCTTAACATTATCAATTGTGTCCGAGCTCTCAACT 27269 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| |||||||| || || ||||| |||||||| Sbjct 27270 TCCAATGTAATGGTTTTCCCGGTTAAGGTTTTAACAAAGATTTGCAT 27316 >seq20754 Length=265263 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | || |||| ||| ||||| ||| || || || |||||||| Sbjct 216150 ACCTCCCCTCAAACGCAAAACCAGATGAAGCGTCGACTCCTTCTGTATGTTATAATCAGC 216209 Query 43954 TAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | || ||| || | ||| || |||||||||||||| || |||||||| | | Sbjct 216210 -AAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCTGGGG 216268 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| || ||| |||||| || || || ||| || || | ||| | Sbjct 216269 GAATCCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTATCAATTGTGTCCGAACTCTCAA 216328 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || | || || ||||| || || |||||||| || || ||||||||| Sbjct 216329 CCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCATG 216378 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||| | | ||||||||| || || || || |||||||| ||||| | Sbjct 216379 CCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC-TGC 216437 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || ||| || | |||||| || ||||||||||||| |||||||| |||| Sbjct 216438 AAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 216497 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || || || ||| || || | | | ||||||| ||| || Sbjct 216498 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATGGTATCTGAGCTCTCAAC 216557 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || |||||||| || ||||| || |||||| Sbjct 216558 TTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 216606 >seq914224 Length=857 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || |||| || | ||||| ||| || ||| || || |||||||| || || Sbjct 734 ACCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 675 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | ||| ||||| || || ||||||| ||||| || |||| Sbjct 674 AAGGGTACGACCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGG 615 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||| |||||| | ||| ||||| | ||| || Sbjct 614 AATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAAC 555 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || ||||| || ||||| || ||||| Sbjct 554 CTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350758116913836