Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq10275 105 6e-18 seq19239 102 7e-17 seq22395 93.3 4e-14 seq19970 87.8 1e-12 seq39326 86.0 5e-12 >seq10275 Length=89473 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || || || ||||||||||| | | ||| |||||||||||| Sbjct 10010 TGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTGC 10069 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || |||||| | || |||||||| ||||| ||| | || || ||||| ||| || Sbjct 10070 TTTCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA 10129 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | | ||| || ||| | |||| |||| || |||||||| |||||| Sbjct 10130 GCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGTC 10189 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| || |||||||| ||||| Sbjct 10190 AACGTCTTCACAAAAATCTGCAT 10212 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || ||||| || || ||||||||||| | | ||| |||||| Sbjct 10687 CACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCTTC 10746 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||| || || || ||| | || | |||||||||||| || | ||||| ||||| Sbjct 10747 CAACTGCTTACCAGCAAAGATCAACCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCCTG 10806 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-TTTCCACGGTAATGGTTT 20177 ||| || || || | | ||| | ||| || || || ||| | ||| || |||| Sbjct 10807 AATCTTCGCCTTAACGTTGTCAATTGTGTCG-GAGCTTTCGACTTCAAGGGTGATTGTTT 10865 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||| | ||||||||||| |||||||| Sbjct 10866 TCCCGGTTAGGGTTTTGACAAAGATTTGCAT 10896 >seq19239 Length=237608 Score = 102 bits (112), Expect = 7e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||||| | |||||| |||| || ||||| |||||||| || || Sbjct 131799 TTAATCATAGTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATA 131858 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| |||| |||||||| Sbjct 131859 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGC 131918 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 131919 TGGTCAGGAGGTATCCCTTCTTTGTC 131944 >seq22395 Length=162664 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| || || ||||| || || ||||| ||| ||| |||||||||||| Sbjct 110732 TGGAGTGTTGACTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGC 110791 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || |||||| |||| ||||| ||||| || || | ||||| || || |||||| Sbjct 110792 TTCCCCGCAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTC 110851 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || | ||| || || | || | || ||||| ||||| ||||| ||||| Sbjct 110852 GCCTTAACATTATCAATAGTGTC-CGAGCTCTCAACTTCCAATGTAATTGTTTTCCCGGT 110910 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 ||| ||||| ||||| ||||||||| Sbjct 110911 CAAGGTTTTAACAAAGATTTGCATT 110935 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || ||||| ||||| ||| ||| | |||||| ||||| Sbjct 27114 TGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCCAGTGTTCTTCCATCTTCTAATTGC 27173 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 || || || |||| |||||||| || || | |||| | ||||| || || ||||| Sbjct 27174 TTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGCGGG-ATACCTTCCTTATCTTGGATTTT 27232 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGG 20183 | || || | ||| | || | || | || ||||| ||||||||||| |||| Sbjct 27233 TGCCTTAACATTATCAATTGTGTC-CGAGCTCTCAACTTCCAATGTAATGGTTTTCCCGG 27291 Query 20184 TCAACGTTTTGACAAAAATTTGCATT 20209 | || ||||| ||||| ||||||||| Sbjct 27292 TTAAGGTTTTAACAAAGATTTGCATT 27317 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || ||||| ||||| ||| |||| | |||||| ||||| Sbjct 110504 TGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCCAGAGTTCTTCCATCTTCTAATTGC 110563 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | |||||| ||||| || | || || ||||| ||||||| Sbjct 110564 TTCCCAGCAAAAATCAACCTCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATTTTT 110623 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || | | | | | ||| | || | || ||||| || || ||||| || || Sbjct 110624 GCCTTAACATTGTCTATCGTATC-CGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGT 110682 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 || || || |||||||||||||| Sbjct 110683 TAAGGTCTTAACAAAAATTTGCAT 110706 >seq19970 Length=23264 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 |||||| | ||| || || ||||| || || || |||||||| | | ||| | ||| Sbjct 102 CAACACAAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCAAGTGTTCGACCATC 161 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| | |||||| || ||| |||| | ||| |||||||| || | ||||| ||||| Sbjct 162 TTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTTCCTTGTC 221 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 ||||||| ||| || | | ||| || ||| || | || || | ||||||| Sbjct 222 TTGAATTTTTGTTTTAACATTGTCAATAGTGTCGG-AGTTCTCAACCTCGAGTGTAATGG 280 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACTCTTATA-AATGACAAA 20232 |||| || || | || || ||||| |||||||| | || | | ||| ||||| ||| Sbjct 281 TTTTTCCAGTTAGTGTCTTAACAAAGATTTGCATCTGTATAATTGCATACAATGAGAAA 339 >seq39326 Length=18362 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || ||||| || || ||||||||||| | | ||| | |||||| Sbjct 8243 CACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGACCATCTTC 8302 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||| || || || ||| | || | |||||| ||||| || | ||||| ||||| Sbjct 8303 CAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 8362 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-TTTCCACGGTAATGGTTT 20177 ||| || || || | | ||| | ||| || || || ||| | ||| || |||| Sbjct 8363 AATCTTCGCCTTAACGTTGTCAATTGTGTCG-GAGCTTTCGACTTCAAGGGTGATTGTTT 8421 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||| | ||||||||||| |||||||| Sbjct 8422 TCCCGGTTAGGGTTTTGACAAAGATTTGCAT 8452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414833451021567