Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq921976 100 2e-16 seq53084 95.1 1e-14 seq368176 91.5 1e-13 seq368178 87.8 1e-12 seq1350 87.8 1e-12 >seq921976 Length=1177 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| ||||| | | ||| | ||||| ||||| Sbjct 883 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTG 942 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || |||| || |||||||| ||| || | | |||||||||| ||| || Sbjct 943 CTTACCTGCGAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTT 1002 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | |||||||| | ||||| ||| | || || || || || || Sbjct 1003 AGCCTTAACATTGTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCAGT 1062 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| || ||||||||| Sbjct 1063 CAGGGTCTTCACGAATATCTGCATC 1087 >seq53084 Length=45269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| ||||| || |||||||||||||| | ||| | ||||| Sbjct 6790 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 6731 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || ||| || |||| | |||||||| ||| || | | |||||||||| Sbjct 6730 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 6671 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || || |||| || || ||| | || ||||| Sbjct 6670 GATCTTTGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 6613 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || |||||||| || ||||||||| Sbjct 6612 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 6580 >seq368176 Length=2289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || ||||||||||| || | ||| |||| || Sbjct 868 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 927 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | |||||||||||| || | | |||||| || Sbjct 928 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 987 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| |||||| ||| | || || || Sbjct 988 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGACTCAACCTCAAGGGTGATTGT 1044 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGATCGAAGAAAGA 48747 |||||| || || ||||| || || ||||||||| | ||| | || |||||| Sbjct 1045 TTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTTCGCTT--TGGAGGAAAGA 1096 >seq368178 Length=4824 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| || ||||||||||| || | ||| ||||||| ||||| Sbjct 3396 ATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTG 3455 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || |||| | ||||||||| || || | | ||||||||| || || Sbjct 3456 CTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTT 3515 Query 48643 CTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 |||| || | || || || |||| ||| || ||| | || || |||||||| Sbjct 3516 -GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTTACC 3572 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| || || ||||||||| Sbjct 3573 CGTTAGGGTTTTGACGAAGATCTGCATC 3600 >seq1350 Length=82824 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | || || ||||| || || |||||| || ||||| || || || Sbjct 7997 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGC- 8055 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||||||||| || ||||| | | || ||||||||||| || || Sbjct 8056 AAGAGTC-CTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCG 8114 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676 | | || |||||||| ||| || ||| |||| | | |||||||| | | ||| Sbjct 8115 GGATACCCTCCTTGTCTTGAATCTT-TGCTTTGACATTGTCAATGGTATCAGAACTCTCA 8173 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || | ||| || |||||||||||||| Sbjct 8174 ACCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 8223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416478598591607