Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq170076 140 5e-29 seq343778 131 3e-26 seq280602 127 3e-25 seq518653 125 1e-24 seq72718 125 1e-24 seq493680 123 4e-24 seq181592 123 4e-24 seq2760 105 1e-18 seq659340 89.7 8e-14 seq33799 80.6 4e-11 >seq170076 Length=16344 Score = 140 bits (154), Expect = 5e-29 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| |||||||| ||| | ||| |||| ||| | || Sbjct 14329 CTCCGCGATAACATCCAAGGTATCACAAAGCCAGCAATCAGGCGTTTGGCGCGTAGAGGA 14388 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || |||| || |||| || |||| |||| || |||||||||| Sbjct 14389 GGAGTGAAGCGTATCAGTGGACTGATCTACGAGGAGACACGTGGCGTGCTGAAGATCTTT 14448 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| || | ||||||| | || ||||||||||| | | ||||| || Sbjct 14449 CTGGAAAACGTGATTCGTGATGCTGTGACTTACACCGAGCACGCGAGGAGGAAGACGGTG 14508 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || | || | |||||||||| | ||||| ||||| Sbjct 14509 ACTGCTATGGATGTTGTGTACGCGCTCAAGAGGCAAGGCCGTACTCTCTATGGATTTGGT 14568 Query 16694 AGTTA 16698 |||| Sbjct 14569 GGTTA 14573 Score = 129 bits (142), Expect = 9e-26 Identities = 179/248 (72%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||| || ||||| || | ||| |||||||| | || Sbjct 9651 CTTCGTGATAACATCCAAGGTATCACAAAACCAGCAATTAGGCGTTTGGCTCGTAGAGGA 9710 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || |||| | ||||||| |||| |||| || |||||||||| Sbjct 9711 GGAGTGAAGCGTATCAGTGGACTCATCTATGAGGAGACACGTGGCGTGCTGAAGATCTTT 9770 Query 16574 CTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | || || | ||||||| || || || || ||||||||| | |||||||| Sbjct 9771 TTGGAAAATGTGATTCGTGATGCTGTTACA-TACACTGAGCACGCTCGTAGAAAGACTGT 9829 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| | || | || || | | | ||||| ||||| Sbjct 9830 GACTGCTATGGATGTTGTTTATGCTCTCAAGAGACAGGGAAGGACTTTGTATGGATTTGG 9889 Query 16693 AAGTTAAT 16700 | |||||| Sbjct 9890 AGGTTAAT 9897 >seq343778 Length=5906 Score = 131 bits (144), Expect = 3e-26 Identities = 180/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||||||||| ||||| || ||||| || | ||| |||||||| | || Sbjct 902 TCTTCGTGATAACATCCAAGGTATCACAAAACCAGCAATTAGGCGTTTGGCTCGTAGAGG 961 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| || |||| | ||||||| |||| |||| || |||||||||| Sbjct 962 AGGAGTGAAGCGTATCAGTGGACTCATCTATGAGGAGACACGTGGCGTGCTGAAGATCTT 1021 Query 16573 CCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | | | || || | ||||||| || || || || ||||||||| | ||||||| Sbjct 1022 TTTGGAAAATGTGATTCGTGATGCTGTTACA-TACACTGAGCACGCTCGTAGAAAGACTG 1080 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 | || | |||||| | || ||||| | || | || || | | | ||||| |||| Sbjct 1081 TGACTGCTATGGATGTTGTTTATGCTCTCAAGAGACAGGGAAGGACTTTGTATGGATTTG 1140 Query 16692 GAAGTTAAT 16700 || |||||| Sbjct 1141 GAGGTTAAT 1149 >seq280602 Length=7172 Score = 127 bits (140), Expect = 3e-25 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || |||||||| || ||||| |||||||| | || || || Sbjct 841 GATAACATCCAGGGAATTACGAAGCCAGCCATTCGTCGGTTGGCTCGTAGGGGAGGCGTG 900 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| || | || || |||| |||| || ||||||||||| || || Sbjct 901 AAGCGTATATCTGGTCTGATTTACGAGGAGACACGTGGCGTGTTGAAGATCTTTCTAGAG 960 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||| || | ||| || |||||||| | | || ||||| || | Sbjct 961 AACGTGATTCGTGATTCTGTTACCTACACTGAGCACGCCAGGAGAAAAACTGTTACTGCT 1020 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || |||||| | || | || || | | | ||||| ||||| ||||| Sbjct 1021 ATGGATGTTGTGTATGCACTCAAGAGGCAGGGTAGGACTCTCTATGGATTTGGTGGTTAA 1080 >seq518653 Length=15040 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || || || ||||||||||| ||| | || |||||| | ||||| | Sbjct 10299 GAGATAACATCCAGGGGATTACAAAGCCAGCTATTCGTAGGCTTGCTCGTAGGGGTGGTG 10240 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||||| ||| | || || |||| |||| || | |||||||| | Sbjct 10239 TCAAGCGTATTTCTGGGTTGATTTACGAGGAGACACGTGGAGTGCTTAAGATCTTTTTGG 10180 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | ||| || |||||||||| | |||||||| || Sbjct 10179 AGAATGTGATTCGTGATGCTGTGACCTACACTGAGCACGCTAGGAGAAAGACTGTTACTG 10120 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || || || | || | || || | | | || || |||||| ||| Sbjct 10119 CTATGGATGTTGTGTACGCTCTCAAGAGGCAGGGAAGGACCTTGTACGGATTTGGAGGTT 10060 Query 16698 AA 16699 || Sbjct 10059 AA 10058 >seq72718 Length=55757 Score = 125 bits (138), Expect = 1e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || ||||||||||| ||| | || |||||| | ||||| ||| Sbjct 55554 GATAACATCCAGGGAATTACAAAGCCAGCTATTCGTAGACTTGCTCGTAGGGGTGGTGTC 55613 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| ||| | ||||| |||| |||| || | ||||| || | || Sbjct 55614 AAGCGTATTTCTGGGTTGATTTATGAGGAGACACGTGGAGTGCTCAAGATTTTTTTGGAG 55673 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | ||| || |||||||||| | |||||||| || | Sbjct 55674 AATGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGAGAAAGACTGTTACTGCT 55733 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | || || || Sbjct 55734 ATGGATGTTGTGTACGC 55750 >seq493680 Length=5058 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| |||||||| ||||| || || || ||| |||||||| | || Sbjct 710 CTCCGTGATAACATCCAGGGAATCACTAAGCCTGCAATTCGGCGTTTGGCTCGTAGAGGA 769 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| | ||||| ||| | || || |||| || | ||||||||||| || Sbjct 770 GGAGTGAAACGTATTTCTGGTTTGATTTACGAGGAGACACGAGGAGTTTTGAAGATATTT 829 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | || || |||||||||| | |||||||| Sbjct 830 TTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTT 889 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 890 ACTGCTATGGATGTTGTTTATGC 912 >seq181592 Length=6512 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| |||||||| ||||| || || || ||| |||||||| | || Sbjct 5828 CTCCGTGATAACATCCAGGGAATCACTAAGCCTGCAATTCGGCGTTTGGCTCGTAGAGGA 5769 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| | ||||| ||| | || || |||| || | ||||||||||| || Sbjct 5768 GGAGTGAAACGTATTTCTGGTTTGATTTACGAGGAGACACGAGGAGTTTTGAAGATATTT 5709 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | || || |||||||||| | |||||||| Sbjct 5708 TTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTT 5649 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 5648 ACTGCTATGGATGTTGTTTATGC 5626 >seq2760 Length=299949 Score = 105 bits (116), Expect = 1e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| || ||||| || ||||||||||| || | | |||||| | || Sbjct 124899 TCTCCGTGATAACATTCAGGGAATTACAAAGCCAGCTATTCGGAGATTAGCTCGTAGGGG 124840 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| ||| | || || || | ||||| |||| | | | || ||||||| || Sbjct 124839 TGGAGTGAAGAGAATCAGCGGGCTGATTTATGAGGAGACTAGAGGAGTCCTGAAGATATT 124780 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | || || | ||||||| | || || |||||||||| | |||||||| Sbjct 124779 TTTGGAAAATGTGATTCGTGATGCTGTTACTTACACTGAGCACGCTAGGAGAAAGACTGT 124720 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||| | |||| | |||||| | | ||||||| ||||| Sbjct 124719 GACTGCAATGGATGTTGTTTATTCTCTGAAGAGACAAGGCAGGACCCTTTATGGATTTGG 124660 Query 16693 AAGTTAAT 16700 | ||| || Sbjct 124659 AGGTTGAT 124652 Score = 87.8 bits (96), Expect = 3e-13 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || ||||| || ||||| ||||| | | | || | | ||| Sbjct 117331 CTCCGTGATAACATTCAGGGAATTACTAAGCCTGCTATTAGGAGATTAGCGAGAAGAGGT 117272 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || | || ||||||| | | ||||||||||| || Sbjct 117271 GGAGTGAAGAGAATCAGCGGTCTGATTTACGAAGAGACGAGAGGAGTTTTGAAGATATTT 117212 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | || || | ||||||| | || || |||||||||| | |||||||| Sbjct 117211 TTGGAAAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTT 117152 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || | ||||| | |||||| | | ||||||||||||| Sbjct 117151 ACTGCAATGGATGTTGTTTACTCTTTGAAGAGACAAGGCAGGACTCTTTATGGTTTTGGT 117092 Query 16694 AGTTAA 16699 ||||| Sbjct 117091 GGTTAA 117086 >seq659340 Length=232 Score = 89.7 bits (98), Expect = 8e-14 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16500 TGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATG 16559 |||||||| | || || || |||||| | ||| ||| |||| || |||| |||| | Sbjct 6 TGGCTCGTAGGGGAGGTGTGAAGCGTATTAGTGGGTTGATCTACGAGGAGACACGTGGCG 65 Query 16560 TTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTA 16619 | ||||||||||| || ||| ||| || | ||||||| | ||| || |||||||| | Sbjct 66 TGTTGAAGATCTTTCTAGAGAACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCCA 125 Query 16620 AACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGA 16679 | || ||||| || | |||||| | || || ||| | || | || ||| | | Sbjct 126 GGAGAAAAACTGTTACTGCTATGGATGTTGTTTACGCACTCAAGAGGCAGGGCAGGACTC 185 Query 16680 TTTATGGTTTTGGAAGTTA 16698 | ||||| ||||| |||| Sbjct 186 TCTATGGATTTGGTGGTTA 204 >seq33799 Length=57554 Score = 80.6 bits (88), Expect = 4e-11 Identities = 167/249 (67%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || ||||| || ||||| ||||| | | || ||| | | || ||| Sbjct 20500 CGTGACAATATTCAGGGAATTACTAAGCCTGCTATTAGGAGGCTAGCTAGAAGAGGCGGA 20441 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | | |||||| | || ||||||| |||| || ||||||||||| || Sbjct 20440 GTGAAGAGAATTAGCGGATTGATTTACGAAGAGACACGTGGAGTGTTGAAGATCTTTCTA 20381 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| | ||||| ||||| |||| | |||||||| || Sbjct 20380 GAAAATGTGATTCGTGATGCTGTGACTTATACTGAGCATGCTAGGAGAAAGACTGTTACT 20321 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||| | | || | || || | | | ||||| ||||| || Sbjct 20320 GCTATGGATGTTGTTTATTCGCTCAAGAGACAGGGTAGGACTCTATATGGGTTTGGTGGT 20261 Query 16697 TAATCTTCT 16705 ||| |||| Sbjct 20260 TAAGATTCT 20252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78225253812651