Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq508016 134 2e-26 seq80028 82.4 9e-11 >seq508016 Length=803 Score = 134 bits (148), Expect = 2e-26 Identities = 355/538 (66%), Gaps = 8/538 (1%) Strand=Plus/Minus Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 ||||| || || || | ||| ||||||| || |||||||| | ||| ||||| | | | Sbjct 788 TCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAG 729 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || ||||||||| || || ||||| || |||||| |||| | | ||| || | Sbjct 728 AAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAAT 669 Query 33466 C---CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33522 ||| | ||| ||||| | | ||||| | |||||||| | ||||| || Sbjct 668 GTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGG 612 Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582 || || || | || || | | ||||||| | | || || | || | || Sbjct 611 ATAGTCTCAACTGCGCGGAACAATCTGCTTTTTTCTTCAGAGTCCTTGATGTACGACTCT 552 Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 | | ||||| ||||| || ||||| ||||||||||| || || || || ||||||||| Sbjct 551 AGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAA 492 Query 33643 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCAC 33701 | ||||| | || || |||||| | || | | |||| || | ||||| || Sbjct 491 GCACGCGCCTCCGCAACTTGGACTTCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAAC 433 Query 33702 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 33761 || ||||| ||| || ||||| || | ||||| | || |||| ||||| | || Sbjct 432 GATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGG 373 Query 33762 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821 ||||| | | ||| | | | ||||| ||||| ||| ||||| || | ||||| || Sbjct 372 AGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAA 313 Query 33822 TGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 || || || ||||| ||||| | ||| || | ||||| |||||||| ||| Sbjct 312 AGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 255 >seq80028 Length=5765 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/189 (71%), Gaps = 7/189 (4%) Strand=Plus/Minus Query 63095 AGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCA 63154 |||||||| | | | | ||||||| || ||||||||| || || || || ||||| Sbjct 322 AGATTTGTTTTTACCT-CTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCA 264 Query 63155 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63214 | || ||||||||||| ||| ||||| | || ||||| | |||| | ||| Sbjct 263 ACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGACCGT--TGCTT 206 Query 63215 --CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCT 63271 |||| || |||||| |||||||| | ||||||||| ||| || ||||||| || | Sbjct 205 TGGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGC-ATAGAAAAGATCTCGGGCACG 147 Query 63272 ATGTTCCTC 63280 |||||| || Sbjct 146 ATGTTCTTC 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615708499028120