Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq19970 109 5e-19 seq131271 104 2e-17 seq10275 95.1 1e-14 seq1350 89.7 5e-13 seq51232 87.8 2e-12 seq914224 86.0 6e-12 seq368178 86.0 6e-12 seq19239 84.2 2e-11 >seq19970 Length=23264 Score = 109 bits (120), Expect = 5e-19 Identities = 163/225 (72%), Gaps = 10/225 (4%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAA-TCA 26825 |||||| | ||||| || ||| ||||||||||| | || || |||| | |||| || Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTC- 256 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| || || | || ||| ||| ||| ||||| ||||| || ||||| ||| Sbjct 255 --CGACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGAT 198 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACT 26943 |||||||| | |||| | || |||||||| ||||||| | ||| || | || || | Sbjct 197 CAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT--GCTGATT 140 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTA 26988 | || ||||| || ||||| ||| ||||||| || || | |||| Sbjct 139 ACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTA 95 >seq131271 Length=1147 Score = 104 bits (114), Expect = 2e-17 Identities = 167/232 (72%), Gaps = 11/232 (5%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAA-TCA 26825 |||||| | ||||| || ||| |||||||||| | || || |||| | |||| || Sbjct 105 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTGAGAACTC- 163 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| || || | || ||| ||| ||| ||||| ||||| || ||||| ||| Sbjct 164 --CGACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGG-ATTCCTCCAGAT 220 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACT 26943 |||||||| | |||| | || |||||||| ||||||| | ||| || | || || | Sbjct 221 CAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT--GCTGATT 278 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | || ||||| || ||||| ||| ||||||| || || | ||| | ||||| Sbjct 279 ACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 330 >seq10275 Length=89473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||||||||| | || ||| | || | ||| | Sbjct 11124 ATGCAGATCTTCGTTAAAACCCTAACTGGAAAGACCATAACCCTTGAGGTTGAAAGCTCC 11065 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || |||||| ||||||||||| || || || || || Sbjct 11064 GACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGAATCCCACCGGACCAG 11005 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| | || | || ||| || || |||||||| | |||| | | |||||| ||| Sbjct 11004 CAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCAGAACCCTAGCCGACTACAAC 10945 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| || | || |||| || | ||||||||||| Sbjct 10944 ATCCAAAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTAGAGGAGG 10898 >seq1350 Length=82824 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | ||||| ||||| | |||||||| | || || | || | || | | | Sbjct 8679 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 8620 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | ||||| |||||| ||||| || || || ||||| ||||| Sbjct 8619 -GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATCA 8561 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||| | |||| | ||||| ||||| ||||||| ||||| | || || || Sbjct 8560 ACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTGCTGATTACAA 8501 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || ||||||| ||||| Sbjct 8500 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 8468 >seq51232 Length=1783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | |||||||| | || || |||| | || Sbjct 442 ATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATAACACTCGAGGTTGAGAGTTCT 501 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC--GATC 26886 ||||| || || | || ||| ||||||| ||||| ||||| || || | |||| Sbjct 502 GACACTATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTTCTANCTAGATC 561 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 ||||||| | |||| | || ||||||||||| |||| | ||| | | || |||| Sbjct 562 AACAAAGGTTGATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTTACTGATTATA 621 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| || ||||| || ||||||| || || | ||| | ||||| Sbjct 622 ACATTCAGAAGGAATCCACACTCCATCTTGTGTTGCGTCTTCGCGGAGG 670 >seq914224 Length=857 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || || ||||| | || ||| | || | || | Sbjct 507 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCC 566 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | |||||| || || || |||||||| || ||||| ||||| Sbjct 567 GATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 626 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || || || ||||| || |||| | | | | | ||||| || Sbjct 627 CAGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACAAT 686 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || ||||| ||| |||||||||| ||||| || || || || Sbjct 687 ATTCAGAAGGAATCCACTCTCCATCTGGTGCTGAGGCTGAGGGGTGG 733 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||||||||| |||||||| || | ||||| |||| | ||| ||| Sbjct 279 ATGCAGATCTTTGTAAAAACTTTAACTGGGAAGACTATCACTCTCGAGGTTGAAAGCTCA 338 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| || || | || || ||||||| ||||| ||||| || ||||| ||| Sbjct 339 ---GACACAATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGAT 395 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||||| | || | | || || ||||| || |||| | | | | | ||||| Sbjct 396 CAGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTAC 455 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || || |||| || || || Sbjct 456 AACATCCAAAAGGAGTCCACCCTCCACCTTGTTCT 490 >seq368178 Length=4824 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || ||| | |||||| | || | ||||| Sbjct 3602 AAGATGCAGATCTTCGTCAAAACCCTAACGGGTAAAACAATCACCCTTGAGGTTGAATCT 3543 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | || ||| ||||| ||||| ||||| || || || || Sbjct 3542 TCCGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGAC 3483 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || |||| || ||| || || ||||| || | ||| | | ||| || Sbjct 3482 CAGCAGCGTCTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGATTAC 3423 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| | ||||||||||| Sbjct 3422 AACATCCAGAAGGAGTCGACTCTTCATCTGGTCCT 3388 >seq19239 Length=237608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 26857 TTACC--GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACA 26914 ||||| |||||||||||||||||||| || || || || || |||| | || ||||| Sbjct 131951 TTACCAGGACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACA 131892 Query 26915 ACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCT 26974 | ||||||| | ||| | || || || || || |||||||| || | || || Sbjct 131891 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCT 131832 Query 26975 GGTCCTGAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| |||| || |||||||| || |||||||| Sbjct 131831 GGTTTTGAGGCTCAGAGGAGG--AACTATGATTA 131800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473100301029040