Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq111358 95.1 3e-14 seq14524 87.8 5e-12 >seq111358 Length=10296 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 111689 TCATCTTATG-TGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGC 111747 ||||||| || | ||||| |||||| | ||||| | | || || || |||||||||| Sbjct 5937 TCATCTTGTGGTTGCAGTTCTATGTAGCCAACGGGGAGTTATCCTGTCAGATGTATCAGC 5996 Query 111748 GATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTT 111807 ||||||||||||| ||||| || || || ||||| |||||| ||| || | || || | Sbjct 5997 GATCTGCTGATATGGGTCTGGGAGTGCCATTTAACATTGCATCTTATGCCTTGCTGACAT 6056 Query 111808 GCTTAATCGCTCATTTT 111824 || | || |||||| || Sbjct 6057 GCATGATAGCTCATGTT 6073 >seq14524 Length=135311 Score = 87.8 bits (96), Expect = 5e-12 Identities = 147/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || |||||||| | ||| || |||||| | |||||| ||||| ||| || || ||| Sbjct 88676 ATTGAGGGTATATATGATACTCTTAAGGAGTGTGCTGTTATTAGCAAATCAGCTGGGGGA 88617 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC-AGGGG 363754 ||||| || || | ||||| | ||||| || | ||||||||||| || || | || Sbjct 88616 ATTGGAGTTTCTGTGCACAACATACGTGCTACTGGG-AGTTACATTCGTGGAACAAATGG 88558 Query 363755 GATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCG 363814 || | || ||||| | ||||| ||||| ||||| || | | ||||| || || || | Sbjct 88557 GACA-TCAAATGGAATTGTTCCTATGCTGCGTGTATTCAATGACACTGCTAGATATGTTG 88499 Query 363815 ACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| || || || || | |||||| Sbjct 88498 ACCAAGGAGGTGGCAAAAG-AAAGGG 88474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1287829890052674