Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq22395 105 6e-18 seq19970 105 6e-18 seq10275 98.7 8e-16 seq1350 98.7 8e-16 seq24017 91.5 1e-13 seq21203 89.7 4e-13 seq57534 87.8 2e-12 seq51232 87.8 2e-12 seq914224 86.0 5e-12 seq188498 82.4 6e-11 >seq22395 Length=162664 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| ||||| || ||| | ||||| | ||||| ||| | Sbjct 27317 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 27258 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || ||| || || || ||||| || || || || || Sbjct 27257 GGACACAATTGATAATGTTAAGGCAAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 27198 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||||| || || |||||| | ||||||| |||| | |||||||| Sbjct 27197 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACACTGGCTGATTATAA 27138 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || |||| | || | ||||||||||| || Sbjct 27137 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 27090 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || |||||||||||| | || || | ||||| ||| | Sbjct 110706 ATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCG 110647 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||| ||| ||||| || || || || || ||||| Sbjct 110646 GATACGATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAGGGTATCCCACCTGATCAG 110587 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | || |||||| | ||||||| |||| | ||||||||| Sbjct 110586 CAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAAC 110527 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || |||| | || | || ||||| || || Sbjct 110526 ATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGGTTGAGGGGTGG 110480 >seq19970 Length=23264 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| ||||||||||| | ||||| |||| || ||| | | Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| ||| ||| ||||| ||||| || ||||| |||||| Sbjct 254 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 195 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 || || | |||| | || || ||||| ||||||| ||| || | || ||||| | Sbjct 194 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT--GCTGATTACA 137 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | ||||| || ||||| || | ||| | ||||| Sbjct 136 ATATTCAGAAGGAATCCACTCTCCATCTTGTGTT 103 >seq10275 Length=89473 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| |||| || ||| | || ||| | |||||||| | | Sbjct 10896 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 10837 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || |||||| ||||| ||||| || || || |||||| Sbjct 10836 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAA 10777 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | | || ||||| | ||||||| | ||| | | ||| ||||| || Sbjct 10776 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCT-AGCTGATTACAA 10718 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || ||||| || |||| || ||| Sbjct 10717 CATCCAGAAGGAATCAACTCTTCACTTGGTG 10687 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||||||||| | || ||| | || || || | | Sbjct 11124 ATGCAGATCTTCGTTAAAACCCTAACTGGAAAGACCATAACCCTTGAGGTTGAAAGCTCC 11065 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || |||||| ||||||||||| || || || || || Sbjct 11064 GACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGAATCCCACCGGACCAG 11005 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||| ||||| |||||||| | ||||| | | ||| || ||| Sbjct 11004 CAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCAGAACCCTAGCCGACTACAAC 10945 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| ||||| || |||| || ||| | | | |||||||| Sbjct 10944 ATCCAAAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTAGAGGAGG 10898 >seq1350 Length=82824 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | |||||||| | ||||| | || |||||| | Sbjct 8679 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 8620 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| || || || ||||| |||||| Sbjct 8619 GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATCAA 8560 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | ||||||||||| ||||||| |||| | ||||| ||| Sbjct 8559 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTGCTGATTACAAC 8500 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 8499 ATCCAGAAGGAGTCCAC 8483 >seq24017 Length=104150 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | || |||||| | ||||| |||| || ||| | Sbjct 3075 ATGCAAATCTTTGTAAAGACGCTTACCGGAAAAACCATTACTCTCGAGGTTGAGAGTTCC 3016 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| ||||| || ||||||||||| Sbjct 3015 GACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCTCCCGATCAG 2956 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || || |||| | | | | ||| || ||| Sbjct 2955 CAGAGGTTGATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCCGACTACAAC 2896 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| ||||| || |||| Sbjct 2895 ATCCAAAAGGAATCCACCCTTCA 2873 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | || |||||| | ||||| |||| || ||| | Sbjct 5998 ATGCAAATCTTTGTAAAGACGCTTACCGGAAAAACCATTACTCTCGAGGTTGAGAGTTCC 5939 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| ||||| || ||||||||||| Sbjct 5938 GACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCTCCCGATCAG 5879 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || || |||| | | | | ||| || ||| Sbjct 5878 CAGAGGTTGATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCCGACTACAAC 5819 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| ||||| || |||| Sbjct 5818 ATCCAAAAGGAATCCACCCTTCA 5796 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||||||||| ||||| || | || ||| | || || ||| | | Sbjct 2847 ATGCAGATTTTTGTAAAAACATTGACTGGGAAGACCATCACCCTTGAGGTTGAGAACTCC 2788 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| ||||| |||||||| ||||| || || Sbjct 2787 GACACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 2728 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || || |||| | | | ||| || ||| Sbjct 2727 CAGAGGTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACTCTTGCCGACTACAAC 2668 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || || ||||| |||| Sbjct 2667 ATTCAGAAGGAGTCTACCCTTCA 2645 >seq21203 Length=98475 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/150 (74%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||||| || ||||||||||||||||| ||||| ||||||||||||| | || || || Sbjct 51084 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 51025 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 || ||||||| | | | | ||||| |||||||| |||||||| || |||| | Sbjct 51024 GCTGGAAGATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCT 50965 Query 24197 AGTGTTAAGATTGAGAGGAGG-ACTATAAT 24225 || || || | || ||||| ||||| || Sbjct 50964 TGTTTTGAGGCTCAGGGGAGGAACTATGAT 50935 >seq57534 Length=59227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || ||| | || |||||| Sbjct 10749 ATGCAGATCTTCGTTAAAACCCTCACCGGCAAAACAATCACCCTTGAGGTCGAGAGTTCT 10690 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| || ||| || || || || || || || || || Sbjct 10689 GACACCATCGATAATGTCAAGGCCAAAATTCAAGATAAGGAGGGAATTCCACCAGACCAG 10630 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||||||||| ||||| |||| | | | | || |||||| ||| Sbjct 10629 CAGAGGTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCGCCGATTACAAC 10570 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || || ||||| |||| Sbjct 10569 ATTCAGAAGGAGTCTACCCTTCA 10547 >seq51232 Length=1783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | || || |||| || ||| Sbjct 442 ATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATAACACTCGAGGTTGAGAGTTCT 501 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC--GATC 24108 ||||| || || | || ||| ||||||| ||||| ||||| || || | |||| Sbjct 502 GACACTATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTTCTANCTAGATC 561 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| || |||||| | || || |||||||| |||| ||| | | ||||||| Sbjct 562 AACAAAGGTTGATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTTACTGATTATA 621 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||| || ||||| ||| | ||| | ||||| Sbjct 622 ACATTCAGAAGGAATCCACACTCCATCTTGTGTT 655 >seq914224 Length=857 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| || || ||||| | |||||| | || || ||| | Sbjct 507 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCC 566 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || || || ||||||||||| ||||| ||||| Sbjct 567 GATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 626 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || || |||||||| || |||| | | | | || || || Sbjct 627 CAGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACAAT 686 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || ||||| || | ||| | ||| | || |||| || || Sbjct 687 ATTCAGAAGGAATCCACTCTCCATCTGGTGCTGAGGCTGAGGGGTGG 733 >seq188498 Length=2629 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || |||| ||| | || || ||| | Sbjct 2442 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACGATCACCCTGGAGGTTGAGAGCTCG 2383 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || ||||||| ||||| || || || || || || || Sbjct 2382 GATACCATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 2323 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| | || ||||| || || |||| | | | | ||||||||| Sbjct 2322 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCTGATTATAAC 2263 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| |||||||| || |||| Sbjct 2262 ATTCAGAAAGAATCAACTCTTCA 2240 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| || ||| || || ||||| || || || || || Sbjct 2611 CGACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCTGACCA 2552 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||||| | || |||||||| || |||| || | | |||||||| Sbjct 2551 GCAGAGGTTGATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACTCTTGCTGATTATAA 2492 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||| || ||| | ||||| ||| | | ||||||||||| Sbjct 2491 CATCCAGAAAGAGTCCACACTCCATTTGGTGCTCCGGTTGAGAGGAGG 2444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425065003409085