Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq19970 104 2e-17 seq22395 96.9 3e-15 seq21203 87.8 2e-12 seq914224 84.2 2e-11 seq10275 82.4 6e-11 >seq19970 Length=23264 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || || || |||||||||||||| |||| ||| | | Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| || ||||| || ||| ||||||| || || ||||| | || ||||| Sbjct 254 GACACTATT-GACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCA 196 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||| | |||| ||| || |||||| | ||||||| ||| | || ||||| || Sbjct 195 ACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAA 136 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| || || || ||| | ||| | |||||| Sbjct 135 TATTCAGAAGGAATCCACTCTCCATCTTGTGTTG 102 >seq22395 Length=162664 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| ||||| | || || ||||||||||| | ||| ||| | Sbjct 27317 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 27258 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || |||||| ||||| ||||| |||| || || Sbjct 27257 GGACACAATTGATAATGTTAAGGCAAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 27198 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| || || || ||||||||||||| | ||| |||| |||||||| Sbjct 27197 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACACTGGCTGATTATAA 27138 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || || || || || | || | || | |||||| |||| || Sbjct 27137 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 27090 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || | || |||||||| || || | ||| ||| | Sbjct 110706 ATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCG 110647 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | ||||| || || ||||||| || || || || |||| |||||| Sbjct 110646 GATAC-GATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAGGGTATCCCACCTGATCA 110588 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || || ||||||||||||| | ||| |||| |||||||| Sbjct 110587 GCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 110528 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || || || || || Sbjct 110527 CATCCAGAAGGAATCCAC 110510 >seq21203 Length=98475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| |||| ||| || ||||| | ||| Sbjct 51077 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGCTGGAA 51018 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| |||| ||||| |||||||| ||||| || ||| | || | || ||| Sbjct 51017 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTTG 50958 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 50957 AGGCTCAGGGGAGGAA 50942 >seq914224 Length=857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 115279 ATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA 115338 |||| | |||||||| ||||| || || ||||| || |||||||| ||| |||| || Sbjct 44 ATTATAGATGCAAATCTTTGTTAAGACCCTCACTGGCAAAACCATCACCCTCGAGGTTGA 103 Query 115339 GTCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 | ||||||| | | |||| || || ||| || ||||| ||||| | || Sbjct 104 GAGTTCCGACACTATCG-ACAATGTTAAGGCAAAGATCCAAGATAAGGAAGGAATTCCTC 162 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 ||||||||||| | || | ||| || || || ||||| |||| | ||| | || | Sbjct 163 CAGATCAGCAAAGGTTGATCTTTGCTGGAAAGCAGTTAGAGGATGGCCGAACTCTTGCTG 222 Query 115458 ATTATAACATTCAAAAAGAGTCTAC 115482 | || || || ||||| |||||||| Sbjct 223 ACTACAATATCCAAAAGGAGTCTAC 247 >seq10275 Length=89473 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| || || || ||||| || ||| | ||| || | Sbjct 10440 ATGCAGATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 10381 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | ||||| || || || ||| || || ||||| |||| ||||| Sbjct 10380 GACACT-ATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 10322 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || ||||| || ||||||| | |||| | || ||||| || Sbjct 10321 GCAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGAACCCTAGCTGATTACAA 10262 Query 115465 CATTCAAAAAGAGTCTACT 115483 ||| || || ||||| ||| Sbjct 10261 CATCCAGAAGGAGTCGACT 10243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420525028864840