Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10275 105 5e-18 seq57534 102 7e-17 seq22395 98.7 8e-16 seq20754 91.5 1e-13 >seq10275 Length=89473 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | ||||| ||||||||||| || |||||||| || || Sbjct 9986 CCACCACGTAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 10045 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || |||||||| || |||||| | || |||| ||| || ||| || Sbjct 10046 AGGGTTCGTCCATCTTCCAATTGCTTTCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGA 10105 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| ||||| | | | | ||| || ||| Sbjct 10106 ATACCCTCCTTGTCCTGAATCTTAGCT--TTCACATTGTCAATAGTATCAGAACTTTCCA 10163 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||||| ||||||| ||| || |||||||||||||| Sbjct 10164 CCTCCAAAGTGATGGTTTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 10212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| || |||||||| || |||||||| || || | |||| | | || ||||| ||| Sbjct 10238 TGCAAAGTCGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCTTCCAACTGT 10297 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| | || ||| || || || | || || ||||| ||| | Sbjct 10298 TTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTA 10357 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | || ||| | |||||| ||||| ||||| Sbjct 10358 GCCTTGACATTGTCGATAGTGTCAGAGCTTTCAACTTCAAGGGTGATTGTTTTCCCGGTT 10417 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||||||||| |||||||| Sbjct 10418 AGGGTTTTGACAAAGATCTGCAT 10440 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| || || || || |||||||| |||||||||||||| Sbjct 10898 CCTCCTCTAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGCT 10957 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| || |||| || | || || || || | || | || || |||||| || Sbjct 10958 AGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 11017 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||| | ||| || | | | | ||||||| | || Sbjct 11018 ATTCCTTCTTTGTCCTGAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACC 11077 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| ||||| || || ||||| || || |||||||| Sbjct 11078 TCAAGGGTTATGGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCAT 11124 >seq57534 Length=59227 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| |||||| ||||||||||| || ||||||||||| || Sbjct 10067 CCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 10126 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| || || || ||| | || |||| ||| ||||| || Sbjct 10127 AGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 10186 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| || Sbjct 10187 ATCCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCAATAGTGTCAGAACTTTCAA 10244 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || ||||| || |||||||| || |||||||| Sbjct 10245 CCTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 10293 >seq22395 Length=162664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 |||||||| || | ||| || || |||||||| || || ||||| || || | || | Sbjct 26643 AGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATCTGCAAGTGTCCTA 26702 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | |||||||| || || || ||| | ||||||| ||||||||| || | ||||| Sbjct 26703 CCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGAATACCCTCC 26762 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 || || ||| | | |||||| | | | | ||||| | ||| ||| | ||| Sbjct 26763 TTATCCTGAATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCTAATGTG 26822 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||||||||| || | ||||| ||||| || |||||| Sbjct 26823 ATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 26861 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 |||||||| || | ||| || || |||||||| || || |||||||| |||| || | Sbjct 110033 AGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCCGCCAGTGTCCTA 110092 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | |||||||| ||||| || ||| | || |||| ||| |||||| || | || ||| Sbjct 110093 CCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGGAATACCTTCT 110152 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 || || || | | |||||| | | | | |||| | ||| ||||| ||| Sbjct 110153 TTATCCTGTATCTTCGCCTTCACATTGTCAATCATGTCTGAGCTCTCAACTTCCAATGTG 110212 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||||| || || | || || ||||| || |||||| Sbjct 110213 ATGGTTTTGCCAGTTAAGGTCTTAACAAAGATTTGCATT 110251 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || | |||||| || || | || || || ||||||||||| || || || || || Sbjct 27546 CCACCCCTTAGCCTGAGAACTAGGTGGAGAGTTGACTCCTTTTGAATATTATAATCTGCG 27605 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || |||||||| || || ||| | || |||| ||| || ||| || Sbjct 27606 AGAGTACGCCCATCTTCCAATTGCTTCCCTGCAAATATCAGCCTCTGCTGATCCGGTGGG 27665 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCCG 16886 | ||||||||||| |||| | ||| || | | | | |||| ||| || || Sbjct 27666 ATACCCTCTTTGTCTTGTATTTTCGCCTTAACATTGTCTATGGTGT--CCGAGCTTTCAA 27723 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||||||||| || | ||||| ||||| |||||||| Sbjct 27724 CTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACAAAGATCTGCAT 27772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| || || || || |||| || | || |||||||| Sbjct 110732 TGGAGTGTTGACTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGC 110791 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || |||||| |||| |||| ||||||||| || | || || || || ||||| | Sbjct 110792 TTCCCCGCAAAAATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTC 110851 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | |||||| | ||| ||||| || || ||||| |||||| Sbjct 110852 GCCTTAACATTATCAATAGTGTCCGAGCTCTCAACTTCCAATGTAATTGTTTTCCCGGTC 110911 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | ||||| ||||| || |||||| Sbjct 110912 AAGGTTTTAACAAAGATTTGCATT 110935 >seq20754 Length=265263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| || ||||| || || | ||| | ||||||| || Sbjct 215947 TGGAGTGTGGATTCCTTTTGAATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGC 216006 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| || || || | || ||||| || ||||| Sbjct 216007 TTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTG 216066 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | |||| ||||| |||||||| ||||| ||| Sbjct 216067 GCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGTC 216126 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||||||||||| |||||||| Sbjct 216127 AAAGTTTTGACAAATATCTGCAT 216149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400498520944930