Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq508016 147 3e-30 >seq508016 Length=803 Score = 147 bits (162), Expect = 3e-30 Identities = 364/546 (67%), Gaps = 10/546 (2%) Strand=Plus/Minus Query 32696 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 32755 ||| || ||||| || || || | ||| ||||||| || |||||||| | ||| ||||| Sbjct 795 AATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATAT 736 Query 32756 GGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 32814 | | || | | | |||||||| ||||| ||||| || ||||| |||| | | || Sbjct 735 AG-CACAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCT 677 Query 32815 CTCCATAAC---CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 32871 | || | ||| | ||| ||||| | | ||||| | |||||||| | | Sbjct 676 CCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAA 620 Query 32872 CACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 32931 |||| || || ||||| | || || | | ||||||| | | || || | | Sbjct 619 CACAGGGGATAGTCTCAACTGCGCGGAACAATCTGCTTTTTTCTTCAGAGTCCTTGATGT 560 Query 32932 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 32991 | | || | | ||||| ||||| || ||||| ||||||||||| || ||||| || | Sbjct 559 ACGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGC 500 Query 32992 CGTAGAA-GCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 ||||||| ||| | ||||| | || || |||||| | || | | | |||| ||| Sbjct 499 CGTAGAAAGCA-CGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTT 441 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 || || || ||||| ||| || ||||| || | ||||| | || |||| || Sbjct 440 TCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTT 381 Query 33111 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 33170 ||| | || ||||| | | ||| | | | ||||| ||||| ||| ||||| || | Sbjct 380 TCGCCGGGAGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCA 321 Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 33230 ||||| || || || || ||||| ||||| | ||| || | | ||||||||||| Sbjct 320 GTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGG 261 Query 33231 AAAATA 33236 || ||| Sbjct 260 AACATA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626269140717200