Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq508016 131 2e-25 seq904591 95.1 1e-14 seq179727 91.5 2e-13 seq184233 89.7 6e-13 seq162745 89.7 6e-13 seq105915 89.7 6e-13 seq438160 87.8 2e-12 seq8036 87.8 2e-12 seq5753 87.8 2e-12 seq3014 87.8 2e-12 seq74737 84.2 2e-11 seq18801 84.2 2e-11 seq6165 84.2 2e-11 seq4651 84.2 2e-11 seq900439 82.4 8e-11 seq882630 82.4 8e-11 seq207844 82.4 8e-11 seq36779 82.4 8e-11 >seq508016 Length=803 Score = 131 bits (144), Expect = 2e-25 Identities = 369/561 (66%), Gaps = 18/561 (3%) Strand=Plus/Minus Query 93124 TGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAA 93183 ||| |||||||| || ||| ||||| || || | | || || || || | ||| || Sbjct 798 TGAAATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAA 739 Query 93184 TATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACG 93243 ||| | | || || ||||||||||| ||||||||||| |||||||| || | ||| Sbjct 738 TATAGCACAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACG 679 Query 93244 TTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 || ||||| || ||||| | | |||||| || ||||| | || || |||| Sbjct 678 CTCCGCAAATGTTTCGGAA---CCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTC 622 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCT-----CGTCCGAATCT 93358 || ||| || | || || | ||| || | |||| ||| | || || || Sbjct 621 AACACAGGGGATAGTCTCAACTGCGCGGAACA----ATCT-GCTTTTTTCTTCAGAGTCC 567 Query 93359 CGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATT 93418 ||||| | || | | |||| ||||| || ||||||| || || || || ||| Sbjct 566 TTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATT 507 Query 93419 TGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACG 93478 ||||| ||||||||| | || |||| | || ||||||| || || | | Sbjct 506 TGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCT 447 Query 93479 AGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAA 93538 || ||||| || || || || || || || ||||| || | | ||| | || ||| Sbjct 446 AGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAA 387 Query 93539 TGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTT 93596 || | || | | || | ||||| | ||| || ||| || | |||||||| Sbjct 386 TGCCTTTCGCCGGGAGTTAGGGTTTCCCAGTGACGGGTA--TCTGAAGATAAATCGACTT 329 Query 93597 CTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATT 93656 | || ||||||| || || ||| |||||||||||||| ||||| || | | | |||| Sbjct 328 CCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATT 269 Query 93657 GAATTGGAAATATGACAAAAC 93677 ||||||| || || ||| ||| Sbjct 268 GAATTGGGAACAT-ACAGAAC 249 >seq904591 Length=667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 287 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGG 344 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||||||| |||| | ||||| Sbjct 345 GCGTGGGTTCAAATCCCACTTCTGACAAATT-GTATTTTAGTTTTT 389 >seq179727 Length=56200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/88 (84%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--GCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || ||| Sbjct 1696 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGGGCG 1753 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||| || ||||| ||||||| || Sbjct 1754 TGGGTTCAAATCCCACTTCTGACAATTT 1781 >seq184233 Length=10615 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 5812 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 5869 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 5870 GCGTGGGTTCAAATCCCACTTCTGACAATTT 5900 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 6436 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 6493 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 6494 GCGTGGGTTCAAATCCCACTTCTGACAATTT 6524 >seq162745 Length=5236 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 909 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 966 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||||| || || || Sbjct 967 CGTGGGTTCAAATCCCACTTCTGACAATTTCTTTTT 1002 >seq105915 Length=13980 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 5977 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 5920 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 5919 GCGTGGGTTCAAATCCCACTTCTGACAATTT 5889 >seq438160 Length=1138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 264 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 321 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| || ||||| ||||||||| Sbjct 322 GCGTGGGTTCAAATCCCACTTCTGACAAAT 351 >seq8036 Length=246518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 89972 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAGGG 90029 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| ||||||| || Sbjct 90030 CGTGGGTTCAAATCCCACTTCTGACAATTT 90059 >seq5753 Length=28212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 8909 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 8852 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||||||||| || ||||| ||||||| || || | |||||| Sbjct 8851 GCGTGGGTTCAAATCCCACTTCTGACAACTTTTTTTAACAATTTT 8807 >seq3014 Length=288199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 120570 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 120513 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 120512 GCGTGGGTTCAAATCCCACTTCTGACAA 120485 >seq74737 Length=71956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 15803 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 15860 Query 126328 TTCGAACCCCACACCTGACAAATTA 126352 ||| || |||||| ||| |||| || Sbjct 15861 TTCAAATCCCACAGCTGTCAAAATA 15885 >seq18801 Length=79259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/101 (80%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 75814 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 75757 Query 126328 TTCGAACCCCACACCTGACA--AATTATTATTGGAATTTTT 126366 ||| || |||||| ||| || ||||| | ||| |||||| Sbjct 75756 TTCAAATCCCACAGCTGTCATCAATTA-TCTTGTCATTTTT 75717 >seq6165 Length=118990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | Sbjct 110079 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGG 110138 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||| || ||||| ||||||| || | ||| ||||| Sbjct 110139 CGTGGGTTCAAATCCCACTTCTGACAACATACTTTTGTTGTTTTT 110183 >seq4651 Length=163950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 25137 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 25194 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| | ||||| | | | |||||||| Sbjct 25195 GGGTTCAAATCCCACAGCTGTC-AATTACTTTGTGGTTTTTTGTT 25238 >seq900439 Length=613 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/104 (79%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||| ||| ||||||||||||||||||||||||| | ||| | |||| || | | | || Sbjct 272 AGTTAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTTTGGTCCTCGTTAGAGGGC 331 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| |||||||||| |||| | ||||| Sbjct 332 GTGGGTTCAAATCCCACTTCTGACAAATT-GTATTTTAGTTTTT 374 >seq882630 Length=480 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||| || || ||||||||| | || ||||||||||| ||||| |||| Sbjct 196 CATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 255 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| ||| | || | | | ||||||| || || || |||| ||| Sbjct 256 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACC 315 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 ||| | | ||| ||||||||||| || ||||| ||||| | ||||||||| | ||| Sbjct 316 CAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATT 375 Query 92968 CATTCCTAGAAGACGTAC-AGGTAGAGCGTC 92997 |||||| | || || || ||| || ||||| Sbjct 376 CATTCCCACCAG-CGCACAAGGCAGCGCGTC 405 >seq207844 Length=10384 Score = 82.4 bits (90), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||| | || | Sbjct 774 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTTGTGAGAGGG 831 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| ||||||| || Sbjct 832 CGTGGGTTCAAATCCCACTTCTGACAATTT 861 >seq36779 Length=15405 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 10801 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 10858 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 10859 GCGTGGGTTCAAATCCCACTTCTGACA 10885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550390028778680