Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq22395 114 1e-20 seq131271 109 5e-19 seq19970 109 5e-19 seq10275 95.1 1e-14 seq39326 89.7 4e-13 seq51232 86.0 5e-12 seq20754 84.2 2e-11 seq19239 82.4 6e-11 >seq22395 Length=162664 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| ||||| ||||||| ||||| ||||| ||||| || | Sbjct 110935 AATGCAAATCTTTGTTAAAACCTTGACCGGGAAAACAATTACATTGGAAGTTGAGAGCTC 110876 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | || || |||||| || || ||||| |||| || || Sbjct 110875 GGACACTATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 110816 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||| |||| |||||| || |||||||||||| ||| |||| |||||||| Sbjct 110815 ACAAAGGCTGATTTTTGCGGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 110756 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || || ||||| || |||| | || || || ||||| Sbjct 110755 TATTCAAAAGGAGTCAACACTCCACCTAGTCCTCCGCCTTCGTGGTGG 110708 >seq131271 Length=1147 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || || || |||||||| | || || | | Sbjct 105 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTGAGAACTCC 164 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | | || ||| ||||||| ||||| ||||| |||| |||||| Sbjct 165 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGA-TTCCTCCAGATCAA 223 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||| | |||| ||| || |||||| | |||||| | ||| | || ||||| ||| Sbjct 224 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAAT 283 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || ||| | ||||||||||| ||||| || Sbjct 284 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 330 >seq19970 Length=23264 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || || ||||||||||| | || || | | Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | | || ||| ||||||| ||||| ||||| |||| |||||| Sbjct 254 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 195 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||| | |||| ||| || |||||| | |||||| | ||| | || ||||| ||| Sbjct 194 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAAT 135 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111404 || || || ||||| || || ||| | ||||||||||| Sbjct 134 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCT 97 >seq10275 Length=89473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || ||| ||||||| |||||||| || |||| |||| Sbjct 10212 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 10153 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| || ||| ||||| || || ||||| ||||| Sbjct 10152 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 10093 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | |||||| || |||||||||||| ||| | || ||||| || Sbjct 10092 CAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAAC 10033 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || | || | ||||| || ||||| Sbjct 10032 ATTCAGAAGGAGTCCACCCTGCACCTTGTCCTCCGTCTACGTGGTGG 9986 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| | ||||| ||||| || ||| | ||| ||| | | Sbjct 10896 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 10837 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || ||| ||||| ||||| | || |||||| Sbjct 10836 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAA 10777 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| || || || ||||||||| ||| | || ||||| || Sbjct 10776 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTAGCTGATTACAAC 10717 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| || || || || ||| | ||||| ||||| |||| Sbjct 10716 ATCCAGAAGGAATCAACTCTTCACTTGGTGCTCCGTCTTCGCGGCGGCA 10668 >seq39326 Length=18362 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| | ||||| ||||| || ||| | ||| ||| | | Sbjct 8452 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 8393 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || ||| ||||| ||||| | || ||||| Sbjct 8392 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 8333 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| || || || ||||||||| | ||| | || ||||| || Sbjct 8332 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTAGCTGATTACAAC 8273 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| || || || || ||| | ||||| ||||| |||| Sbjct 8272 ATCCAGAAGGAATCAACTCTTCACTTGGTGCTCCGTCTTCGCGGCGGCA 8224 >seq51232 Length=1783 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC--GATCAACAAAGGCTTATTTA 111320 ||||||||| | || ||||| ||||| || | | |||||||||||| | |||| Sbjct 519 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTTCTANCTAGATCAACAAAGGTTGATTTT 577 Query 111321 TGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATC 111380 ||| || |||||| | || ||| | ||| | | |||||||| || || || ||||| Sbjct 578 TGCTGGAAAACAACTCGAGGATGGTCGAACACTTACTGATTATAACATTCAGAAGGAATC 637 Query 111381 TACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| ||| | ||||||||||| ||||| || Sbjct 638 CACACTCCATCTTGTGTTGCGTCTTCGCGGAGG 670 >seq20754 Length=265263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||||||||| |||| || || ||||| || ||||| ||| | Sbjct 216149 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 216090 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 || || ||| | | || || |||||| || |||||||| | |||| | ||||| Sbjct 216089 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGG-GATCCCACCAGATCA 216031 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || || || |||| ||| || | || ||||| || Sbjct 216030 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 215971 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| ||||| ||||| || | ||| | || || |||||||| Sbjct 215970 TATTCAAAAGGAATCCACACTCCACCTTGTGCTTCGCCTTCGCGGTGG 215923 >seq19239 Length=237608 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| | || || || || ||||| |||| ||| || ||||| |||||| Sbjct 131944 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 131885 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 ||| | |||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 131884 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 131835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418247132229400