Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq22395 127 1e-24 seq20754 122 6e-23 seq131271 107 1e-18 seq19970 105 5e-18 seq19239 82.4 5e-11 >seq22395 Length=162664 Score = 127 bits (140), Expect = 1e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| |||||||| |||||||| || | ||| || | | Sbjct 26861 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 26802 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || ||| ||||| |||||| | || | |||| Sbjct 26801 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 26742 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| |||||||||||||| || || | || ||| | || | || |||||||| Sbjct 26741 ACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 26682 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 |||||||||||| |||||||| ||| Sbjct 26681 TATTCAGAAGGAGTCTACTCTCCAT 26657 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| ||||| || ||||||||||| ||||| || | | Sbjct 27317 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 27258 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| ||||| || ||| | || | |||| Sbjct 27257 GGACACAATTGATAATGTTAAGGCAAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 27198 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || || || ||||| || ||| |||||||| || ||| |||| ||||| || Sbjct 27197 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACACTGGCTGATTATAA 27138 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || ||||||||||| || ||||| Sbjct 27137 CATCCAGAAGGAATCCACCCTTCA 27114 Score = 111 bits (122), Expect = 1e-19 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || ||||| || ||||| || || ||||| || | | Sbjct 110706 ATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCG 110647 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | | || ||||| ||||||| || || |||||| | ||||| | Sbjct 110646 GATACGATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAGGGTATCCCACCTG---AT 110590 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| | || |||||||| || ||| |||||||| || |||| |||| ||||| Sbjct 110589 CAGCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTAT 110530 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || || ||||||||||| || ||||| Sbjct 110529 AACATCCAGAAGGAATCCACCCTTCA 110504 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| ||||||||||| || ||||| || | | Sbjct 110251 AATGCAAATCTTTGTTAAGACCTTAACTGGCAAAACCATCACATTGGAAGTTGAGAGCTC 110192 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| | | | | | || | ||| || || |||||||| ||| | || |||| Sbjct 110191 AGACATGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 110132 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| | || ||| | || |||| || ||||| Sbjct 110131 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACAA 110072 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||| |||||||| |||||||| ||| Sbjct 110071 TATCCAGAAGGAGTCTACTCTCCAT 110047 >seq20754 Length=265263 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| ||||||||||| || || ||| | ||| || | || Sbjct 216605 ATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTCA 216546 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || || || |||||| | ||| | |||| Sbjct 216545 GATACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAG 216486 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| |||||||| || ||| || || | || ||||||||| Sbjct 216485 CAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGATTACAAT 216426 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| | | ||||| Sbjct 216425 ATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 216379 >seq131271 Length=1147 Score = 107 bits (118), Expect = 1e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| ||| |||| || || |||||||| | || || | | Sbjct 105 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTGAGAACTCC 164 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||||||| || || || || | ||| | | ||| Sbjct 165 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGATT-CCTCCAGATCAA 223 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| |||||||| |||||| ||| | || ||||||||| Sbjct 224 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAAT 283 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 |||||||||||||| ||||| ||| | || || ||| | || ||||| ||| Sbjct 284 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGTTAT 334 >seq19970 Length=23264 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| ||| |||| || ||||||||||| | || || | | Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||||||| || || || || | ||| | | ||| Sbjct 254 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 195 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| |||||||| |||||| ||| | || ||||||||| Sbjct 194 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAAT 135 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 |||||||||||||| ||||| ||| | || || ||| Sbjct 134 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGT 99 >seq19239 Length=237608 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| || ||||| |||| ||||| || || |||||||| ||||| | ||| Sbjct 131944 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 131885 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| |||| |||| ||||||||||| ||||| ||||| || ||||| |||| || Sbjct 131884 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTG 131825 Query 22047 CGTTTACGAGGAGGA 22061 | | |||||||| Sbjct 131824 AGGCTCAGAGGAGGA 131810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354067394525878