Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq508016 127 4e-24 >seq508016 Length=803 Score = 127 bits (140), Expect = 4e-24 Identities = 270/395 (68%), Gaps = 15/395 (4%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| |||||||| || || ||||| ||| ||||||||| Sbjct 403 CTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTCATG 462 Query 42483 AAAGAGGTGCAGTACTT--TGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| || || | || |||||||| ||| |||||||||||||| || || || || Sbjct 463 AAAGAAGTCCA--AGTTGCGGAGGCGCG-TGCTTTCTACGGCTTCCAAATCGCGATTGAA 519 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAACA--CGTACATCCTGGATCCCGTC 42596 ||| | || || ||| |||| || |||| || | | |||||||| ||| | | Sbjct 520 AACATCCATTCCGAGATGTA---CAGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGAA 576 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 || | | | ||||| || | ||||| || ||||| | ||||||||||| | Sbjct 577 GAAAAAAGCAGATTGTTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAG 636 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| || |||||||| || |||| ||| || | ||| | |||| || ||| Sbjct 637 TGGGCCCTACGTTGGATCGACGGTTCCGA---AACATTTGCGGAGCGTTTGGTTGCATTT 693 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | || || || || || || || || |||| | || |||||| | || || Sbjct 694 GCTTGTGTGGAAGGTATTTTTTTTTCTGGAAGCTTCTGTGCTATATTCTGGTTAAAAAAG 753 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || || ||||| ||| | |||||||||||||| Sbjct 754 CGGGGGTTAATGCCTGGATTAACCTTCTCGAACGA 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 933365895866320