Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq29194 91.5 1e-13 seq111358 89.7 4e-13 >seq29194 Length=272514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||||||||||||| | ||| | || || | | ||| || |||||||| || || Sbjct 233942 ACCAGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCGATGTTAAATGGCAC 234001 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 |||||||||||| ||| | || | |||||||| |||||||| | ||| || | || || Sbjct 234002 TCCCAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAAC 234061 Query 20359 ATAAAATTGACATAACAAG 20377 |||||| || || |||||| Sbjct 234062 ATAAAACTG-CA-AACAAG 234078 >seq111358 Length=10296 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||| ||||||||| | ||| | || | | || ||| ||||||||||| || || Sbjct 6079 ACCAGAAACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTAAATGGCAC 6020 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| |||||| || | || | |||||||| ||||||||| | ||| |||| ||||| Sbjct 6019 TCCCAGACCCATATCAGCAGATCGCTGATACATCTGACAGGATAACTCCCCGTTGGCTAC 5960 Query 20359 ATAAAATTG 20367 ||| || || Sbjct 5959 ATAGAACTG 5951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 436244009443880