Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1350 96.9 3e-15 seq10275 95.1 9e-15 seq57534 91.5 1e-13 seq22395 89.7 4e-13 seq20754 87.8 1e-12 >seq1350 Length=82824 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || || || ||||| || || ||| ||||||||||||||||||||| Sbjct 8225 CCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGCC 8284 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| | | | || || | |||||| |||||||| ||||| | |||||| ||| || Sbjct 8285 AATGTCCTCCCATCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGGA 8344 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCG 34077 | | || ||||| ||| ||| ||| | || | | | |||| | | ||| Sbjct 8345 ATACCTTCCTTGTCTTGAATCTTTGCCTTTACATTGTCA---ATAGTATCTGAACTTTCA 8401 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || || ||||| ||||| || |||||||| ||||| Sbjct 8402 ACTTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 8451 >seq10275 Length=89473 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || || || ||| ||||||||||||||||||||| Sbjct 9982 GAAACCACCACGTAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATC 10041 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 || | ||| | || ||||||||||| || ||||| ||||| | |||||||||| Sbjct 10042 AGCGAGGGTTCGTCCATCTTCCAATTGCTTTCCCGCAAAGATCAGCCTCTGCTGATCCGG 10101 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTCACACTATCAGTAGA 34073 || | | ||| |||||| ||| || || | | || | | | |||||| | Sbjct 10102 GGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCA---ATAGTATCAGAACT 10158 Query 34074 TTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || | || || ||||| ||||| | || |||||||| || ||||| Sbjct 10159 TTCCACCTCCAAAGTGATGGTTTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 10212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || |||| ||||| || ||||||||| ||||||||||| || | ||| Sbjct 10451 AGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCGAGGGTTCGG 10510 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||| |||||||| ||||| | ||||| || || | | |||| Sbjct 10511 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCGGGTGGGATTCCCTCT 10570 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 || ||| ||||| ||||| | | | | | || | ||| ||| | || Sbjct 10571 TTATCCTGGATTTTCGCCTTAACGTTATCAATAGTGTCGGAGCTTTCAACTTCAAGGGTG 10630 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||| |||||||| ||||| || ||||||||||| Sbjct 10631 ATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 10668 >seq57534 Length=59227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| |||||||| ||| || ||| |||||||||||||||||| || | | Sbjct 10067 CCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG-C 10125 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || ||||| ||||| || ||||| ||||| | |||||| || Sbjct 10126 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTC 10179 >seq22395 Length=162664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 167/238 (70%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || ||||||| |||||| ||||| || || |||||||||||| |||||||| Sbjct 26630 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATC 26689 Query 33957 TGCCAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || ||| |||| || | || ||||| ||||| || ||||| || || | ||| || || Sbjct 26690 TG-CAAGTGTC-CTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCT 26747 Query 34015 ACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTA 34071 || | | ||| || ||| ||| || ||| | || | || | || | | Sbjct 26748 GGTGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATC---GTGTCTG-A 26803 Query 34072 GAT-TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | | || ||| | || || |||||||| |||| ||||| ||||||||||||||| Sbjct 26804 GCTCTCAACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 26861 >seq20754 Length=265263 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||| |||||||||||||| ||||||||| ||||| ||||| | Sbjct 216150 ACCTCCCCTCAAACGCAAAACCAGATGAAGCGTCGACTCCTTCTGTATGTTATAATCAG- 216208 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| |||| | | || || | |||||| || |||||||||| |||||||| || Sbjct 216209 CAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTC 216263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392563847664814