Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1350 116 4e-21 seq22395 109 5e-19 seq24017 105 7e-18 seq914224 93.3 4e-14 seq20754 84.2 2e-11 seq921976 82.4 7e-11 >seq1350 Length=82824 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||||||||| || ||||| | | |||||||| || ||||| ||||| Sbjct 7997 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCA 8056 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| ||||||||||| | | |||| | |||||| ||||| || || Sbjct 8057 AGAGTCCTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 8116 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| | Sbjct 8117 ATACCCTCCTTGTC-TTGAATCTTTGCTTTGACATTG-TCAATGGTATCAGAACTCTCAA 8174 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| ||| || ||||||||||||||| Sbjct 8175 CCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCATG 8224 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | ||| | ||| | | ||||||| || ||||||||||| || Sbjct 8224 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 8283 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | | ||||| ||||| || |||| | |||| || | ||| ||||||||||| Sbjct 8284 CAATGTCCTCCCATCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGG 8343 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||| ||||| ||| | |||| ||| |||| || | || || | || Sbjct 8344 AATACCTTCCTTGTC-TTGAATCTTTGCCTTTACATTG-TCAATAGTATCTGAACTTTCA 8401 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || || || || || || ||||| |||||||| Sbjct 8402 ACTTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 8451 >seq22395 Length=162664 Score = 109 bits (120), Expect = 5e-19 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||||| ||||| || | ||||||| |||||||| ||||| || | Sbjct 110967 TTGACTCCTTTTGAAAATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTG 111026 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | ||| || || || || || |||||||||||||| ||| |||| | |||| Sbjct 111027 CAAAGATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTGTC-CTGAATTTTGGCTTTA 111085 Query 138539 --ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | ||||| | ||| || |||| || | || || |||||||| || Sbjct 111086 ACATTG-TCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGT 111144 Query 138597 TTTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 111145 CTTCACAAATATCTGCAT 111162 >seq24017 Length=104150 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| ||| ||||| || || || || | | Sbjct 2654 GACTCCTTCTGAATGTTGTAGTCGGCAAGAGTGCGCCCATCCTCAAGCTGCTTTCCAGCA 2713 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | | ||| ||||| ||||| || ||||| ||||| ||| || || | | Sbjct 2714 AAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTAACA 2773 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||| ||||| | || | || || ||||||| ||||| Sbjct 2774 TTG-TCAATGGTGTCGGAGTTCTCAACCTCAAGGGTGATGGTCTTCCCAGTCAATGTTTT 2832 Query 138600 TACAAAAATCTGCAT 138614 ||||||||||||||| Sbjct 2833 TACAAAAATCTGCAT 2847 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| ||| ||||| || || || || | | Sbjct 5577 GACTCCTTCTGAATGTTGTAGTCGGCAAGAGTGCGCCCATCCTCAAGCTGCTTTCCAGCA 5636 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | | ||| ||||| ||||| || ||||| ||||| ||| || || | | Sbjct 5637 AAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTAACA 5696 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||| ||||| | || | || || ||||||| ||||| Sbjct 5697 TTG-TCAATGGTGTCGGAGTTCTCAACCTCAAGGGTGATGGTCTTCCCAGTCAATGTTTT 5755 Query 138600 TACAAAAATCTGCAT 138614 ||||||||||||||| Sbjct 5756 TACAAAAATCTGCAT 5770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||||||| | ||| || ||||| || || || || | | Sbjct 2426 GACTCCTTTTGAATATTGTAGTCGGCAAGAGTTCGTCCATCCTCAAGCTGCTTTCCAGCA 2485 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| | | ||| || || ||||| || ||||| ||||| || | || | ||| Sbjct 2486 AAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC-CTGTATCTTCGCCTTAAC 2544 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | ||| ||||| | || | || || ||||||| ||||| Sbjct 2545 ATTG-TCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTCAAAGTTT 2603 Query 138599 TTACAAAAATCTGCATG 138615 | ||||||||||||||| Sbjct 2604 TAACAAAAATCTGCATG 2620 >seq914224 Length=857 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || ||||| | ||| | || | | | ||||||||||| ||||||||||| Sbjct 505 CCACCACGTAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 446 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| || || | | |||| | | || || |||||||| Sbjct 445 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 386 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| |||| | || | ||||| | || || Sbjct 385 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTTTCAAC 327 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||| | |||||||||||| |||||||| Sbjct 326 CTCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 279 >seq20754 Length=265263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | || ||||| | | |||| ||||| ||||| ||||| || Sbjct 216378 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 216437 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | ||||| |||||||| || | | | || | | ||| ||||| ||||| Sbjct 216438 AAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 216497 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| ||| |||| ||||| | | ||| || | ||| | Sbjct 216498 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGT-CGATGGTATCTGAGCTCTCAA 216556 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||| || || || | |||||| ||||||||||||||| Sbjct 216557 CTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 216606 >seq921976 Length=1177 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || ||||| || || ||||| | Sbjct 893 GACTCCTTCTGGATGTTGTAGTCAGCT-AGTGTTCGGCCATCCTCAAGCTGCTTACCTGC 951 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | ||||| |||||||| || || ||||| ||||| ||| | || | ||| Sbjct 952 GAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTC-CTGAATCTTAGCCTTAA 1010 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||| || | ||||| ||||| | || | || || |||||||| || Sbjct 1011 CATTG-TCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCAGTCAGGGTC 1069 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 1070 TTCACGAATATCTGCAT 1086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490495787489040