Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq22395 111 1e-19 seq53084 98.7 7e-16 seq914224 89.7 4e-13 seq10275 87.8 1e-12 seq20754 82.4 5e-11 >seq22395 Length=162664 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| || | | || |||| |||||||| ||||| |||| Sbjct 27582 TCCTTTTGAATATTATAATCTGCGAGAGTACGCCCATCTTCCAATTGCTTCCCTGCAAAT 27641 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | || |||||||| |||||| |||| | Sbjct 27642 ATCAGCCTCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGTATTTTCGCCTTAACATTG 27701 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 ||| ||||| | |||||| || |||| || || ||||| || ||||| ||||| || Sbjct 27702 TCTATGGTGTCCGAGCTTTCAACTTCCAGTGTGATGGTTTTTCCAGTTAAGGTTTTAACA 27761 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 27762 AAGATCTGCAT 27772 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| ||||| Sbjct 110744 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCCGCAAAA 110803 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | || || |||| || | ||||| || || ||||| |||| | Sbjct 110804 ATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACATTA 110863 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| ||||||||||| || || || ||||| || Sbjct 110864 TCAATAGTGTCCGAGCTCTCAACTTCCAATGTAATTGTTTTCCCGGTCAAGGTTTTAACA 110923 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 110924 AAGATTTGCAT 110934 >seq53084 Length=45269 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||| ||| || || || || ||||| || Sbjct 6807 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 6748 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| |||| ||||| ||| | ||||| | |||||||| |||| || Sbjct 6747 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 6688 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||| || | ||| | | | |||||| | | ||| || Sbjct 6687 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGAC 6629 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || |||||||||| ||||| |||||||||||||| Sbjct 6628 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 6581 >seq914224 Length=857 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || | ||| || || |||| || || | |||||||||| || | |||||| | Sbjct 435 CATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCT 376 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| || ||| |||| | | | |||||||| |||||| || || | ||| | Sbjct 375 TGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTTTCAACCTCGAGAGTGA 316 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || |||||||||||||| ||||||||||| Sbjct 315 TAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 279 >seq10275 Length=89473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || || | |||||||| || || || || || |||| Sbjct 10210 CATC-CCACCGCGAAGACGAAGCACAAGGTGCAAAGTCGACTCCTTCTGGATGTTGTAAT 10268 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | || |||| ||||| ||||| || ||||||| || | ||||||||| | Sbjct 10269 CAGCTAGGGTTCGGCCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGATCTG 10328 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGC 39664 || | ||||| ||||| | | | || | || | || |||| || ||||| | || Sbjct 10329 GTGGGATTCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTGTCGATA--GTGTCAGAGC 10385 Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || | || |||||||| || |||| ||||| || ||||||||||| Sbjct 10386 TTTCAACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 10440 >seq20754 Length=265263 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCT--TTTTGTATATTATAATCGG 39550 || || | |||||||| |||| ||| ||||| | || || ||||| ||||| || | Sbjct 160559 CCTCCCCTCAAACGCAACACCAGATG--AAGTGTTGACTCCTTCTGTATGTTATAGTCAG 160616 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | | | |||| || | ||| ||||| ||| || ||||||||||| || | | Sbjct 160617 CAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAGTATCAAACGCTGCTGCTCGG--G 160674 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | |||||| ||||| ||||| || | | ||| |||||| | || || | Sbjct 160675 GAATGCCTTCCTTGTCTTGAATTTTGGCCTTCACATTGTCTATTGTGTCAGAACTCTCAA 160734 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || || || ||||| ||||| || || |||||||||||| Sbjct 160735 TCTCCAAGGTGATAGTCTTCCCCGTCAAAGTCTTAACAAAGATCTGCATG 160784 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || ||| || |||||||| | || ||| || || ||||| ||||| || Sbjct 216378 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 216437 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| || | ||||||||| |||| || || | |||||| || | || Sbjct 216438 AAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 216497 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| || ||| |||| || |||| | || |||| ||| || Sbjct 216498 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATG--GTATCTGAGCTCTCA 216555 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || |||||||||||||| || || ||||||||| Sbjct 216556 ACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 216606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343434046481831