Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq254151 136 5e-27 seq178713 114 2e-20 seq14338 113 6e-20 >seq254151 Length=6888 Score = 136 bits (150), Expect = 5e-27 Identities = 275/399 (69%), Gaps = 12/399 (3%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | || | || ||||| ||||| | ||||| ||||| || Sbjct 4555 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 4614 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || | ||||| ||||| |||||||| || ||||| Sbjct 4615 AACAACTATTATACCAGTATTTCCTT--CGAAACCGTCCATTTCTGTCAATAGTTGGTTC 4672 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 4673 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 4730 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAG 16121 | |||||||| ||||||| || || ||||| || |||||| || ||| ||| Sbjct 4731 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 4789 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 4790 AGATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 4849 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 4850 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCC 4908 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 ||||| || ||| | || || ||||| |||||| Sbjct 4909 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAAT 4947 >seq178713 Length=25292 Score = 114 bits (126), Expect = 2e-20 Identities = 198/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| || || |||||||| || || | ||||||||| | Sbjct 19835 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 19778 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | ||| | ||||| ||||||||||||||||| || || ||| Sbjct 19777 CCTCCCATTCCTGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 19718 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || |||| || | ||||| ||| || | || || || Sbjct 19717 CAAGGCGC--TTTCGACTTCGCCTTCTCGAACAAATCCCT--CACTCTAGAAGCTCCAAC 19662 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 19661 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 19602 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 19601 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 19560 >seq14338 Length=69158 Score = 113 bits (124), Expect = 6e-20 Identities = 197/284 (69%), Gaps = 16/284 (6%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| |||||||| || || |||||||| || |||| |||||||| | Sbjct 28648 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 28704 Query 16034 CATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 16087 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 28705 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 28761 Query 16088 GATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC 16145 || || || ||||| || || ||||| | ||||| ||| | || ||| Sbjct 28762 AATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCC 28819 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 16205 ||||| ||||||| ||| ||||| | || || | |||| || || || ||| | Sbjct 28820 ACACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCC 28879 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || | |||| || | ||| |||||||| ||||| || Sbjct 28880 TCACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTACCAGG 28923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613529318997040