Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq254151 132 6e-26 seq14338 118 1e-21 seq14524 102 1e-16 seq8121 102 1e-16 seq80028 86.0 7e-12 >seq254151 Length=6888 Score = 132 bits (146), Expect = 6e-26 Identities = 254/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 4555 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 4614 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||| ||||| |||||||| |||||||| Sbjct 4615 AACAACTATTATACCAGTATTTCCTT--CGAAACCGTCCATTTCTGTCAATAGTTGGTTC 4672 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 4673 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 4730 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 4731 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAAA 4790 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 4791 GATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA- 4849 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 4850 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCA 4909 Query 9549 GTACCTGG 9556 ||||| || Sbjct 4910 GTACCAGG 4917 >seq14338 Length=69158 Score = 118 bits (130), Expect = 1e-21 Identities = 198/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| |||||||| ||||| |||||||| || |||| |||||||| | Sbjct 28648 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 28704 Query 9341 CATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 28705 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 28761 Query 9395 AATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 |||||| || | ||| | || | ||||| | ||| | || || || |||| Sbjct 28762 AATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 28820 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 |||| ||||||| ||| ||||| | || || | |||| || || || ||| | | Sbjct 28821 CACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 28880 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || | |||| || | ||| |||||||| ||||| || Sbjct 28881 CACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTACCAGG 28923 >seq14524 Length=135311 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || |||||||| || |||||||| || | ||||| | ||| ||| ||||| | ||| Sbjct 88899 TGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 88958 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | |||||||| | |||||| |||| || ||| |||||| || | | Sbjct 88959 GACATCAAATGGTATGTCTTGATGACAGATTCAACATCATCCTTGTGGATCCCAACAGAT 89018 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| ||| || |||| | | | || | || | || | || || Sbjct 89019 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 89077 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | ||||||||||||||| |||||||||| || ||||| |||| Sbjct 89078 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 89122 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | |||||| ||||| || ||| | |||| Sbjct 87543 ACATATCTTGGCAGAGCAATTGAAGCAAGATTGCATACAGCAGTTTCAGTTGGACTTGTG 87602 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | ||| || ||||||||||| || ||| || || || | ||||| |||||| Sbjct 87603 TATTCAATAATCTCGGTACACAAGTTAGACGACTTGATAGTGCCAAGATTCTGCTGGTTA 87662 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||||| ||||| Sbjct 87663 CTTTTTCTATTGCACGTATCCT 87684 >seq8121 Length=344380 Score = 102 bits (112), Expect = 1e-16 Identities = 194/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 277517 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 277576 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 ||||||| | || |||||| | ||||||||||| || || | |||||||||| Sbjct 277577 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCAGTGAGAAGTTGGTTA 277634 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || || || | ||||||||| | | ||||| | | |||| | || || Sbjct 277635 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 277694 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||||||||||||||| ||||| | | | ||| |||||| || | | || | Sbjct 277695 GCATCAATCTCATCAATAAAGACTAAAGAAGGTGAATTTTCCTTTGCCTTGTTGAATAAG 277754 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | ||| || || |||||||||||||||||||| || || Sbjct 277755 TCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 277798 >seq80028 Length=5765 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||||| || |||||||| | ||| || ||||| || ||| | |||| Sbjct 730 ACATATCGTGGAAGAGCAATTGATGCAAGATTACACACAGCAGTTTCAGTAGGACTTGTG 671 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | |||||| ||||||||||| ||| ||| || || || | ||| | |||||| Sbjct 670 TACTCAATAATTTCAGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTTTGCTGGTTA 611 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | || || | ||||| Sbjct 610 CTTTTTCTATTACAAGAATCCT 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583125171480680