Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq57534 127 1e-24 seq1350 113 3e-20 seq188498 105 4e-18 seq20754 104 1e-17 seq53084 102 5e-17 seq51232 102 5e-17 seq24017 95.1 8e-15 seq19239 95.1 8e-15 seq19970 93.3 3e-14 seq21203 91.5 9e-14 seq368176 84.2 1e-11 >seq57534 Length=59227 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||||| ||||| || | ||| || ||||||||||| ||||||| Sbjct 10065 TTCCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG 10124 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| |||| ||| ||||| ||||| || || | ||||||||| | | Sbjct 10125 CAAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGG 10184 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||||||| ||||| |||||| | || | ||| |||| Sbjct 10185 GAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAACTTTCAA 10244 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || ||||| || || ||||| || || || |||||||||||| Sbjct 10245 CCTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATA 10294 >seq1350 Length=82824 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| ||||| || | || || ||||| ||||||||||||| | Sbjct 7997 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCA 8056 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | || ||||| ||||| || ||||| || | || ||||||||| |||| Sbjct 8057 AGAGTCCTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 8116 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | || | ||| |||||| Sbjct 8117 ATACCCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCAGAACTCTCAACC 8176 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 8177 TCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 8223 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| |||| |||| || ||||||||||| ||||| Sbjct 8717 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCGGCCATCTTCAAGCTGTTTTCCAGCAAAG 8776 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || |||||||| |||||| |||||| Sbjct 8777 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 8836 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || || | || ||||| ||||| ||||| ||||| ||| Sbjct 8837 TCAATGGTGTCAGAACTCTCGACCTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTAACA 8896 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 8897 AAGATCTGCAT 8907 >seq188498 Length=2629 Score = 105 bits (116), Expect = 4e-18 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || |||||||||||||||||| || | |||| | || |||| || Sbjct 2233 AACCAGGTGAAGAGTTGATTCTTTCTGAATGTTATAATCAGCAAGGGTACGACCATCCTC 2292 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || | ||||||||| | || | ||||||||||| Sbjct 2293 CAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTG 2352 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGG 34947 |||||| || || || | || || | ||| || |||||| || | ||| || | Sbjct 2353 AATCTTTGCCTTCAC--AT--TGTCAATGGTATCCGAGCTCTCAACCTCCAGGGTGATCG 2408 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || | |||||| ||||| |||||||| Sbjct 2409 TCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 2442 >seq20754 Length=265263 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | |||||||| |||| || || ||||| |||||||| || | | Sbjct 216151 CCTCCCCTCAAACGCAAAACCAGATGAAGCGTCGACTCCTTCTGTATGTTATAATCAGCA 216210 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | |||| || || || || || |||||||| | ||| ||||||||| | || Sbjct 216211 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCTGGGGGA 216270 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930 | ||| |||||||| ||| || || || | |||| || | ||| ||| Sbjct 216271 ATCCCTTCCTTGTCTTGAATTTTGGCCTTCAC----GTTATCAATTGTGTCCGAACTCTC 216326 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||| || |||||||| || | |||||| || ||||| ||||| Sbjct 216327 AACCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 216377 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | | ||||| |||| || ||| |||||||| || || || | | Sbjct 216379 CCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCA 216438 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | | |||| || || ||||| || |||||||| | | ||||||||| | || Sbjct 216439 AGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGA 216498 Query 34875 ACCCCCTCCTTGTCGCTAATCTT---CTGT---TTGACGGATGCTATCGATTCACCGGCC 34928 | ||||||||||| ||||| || | ||| | |||| |||| | | | | Sbjct 216499 ATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTC-GATGGTATC---TGA--GCTC 216552 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | ||| || || || ||||| | ||| || ||||| |||||||| Sbjct 216553 TCAACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 216605 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| |||| |||| ||| || ||||| ||||||||||| | | Sbjct 160559 CCTCCCCTCAAACGCAACACCAGATGAAGTGTTGACTCCTTCTGTATGTTATAGTCAGCA 160618 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | | |||| || || || || || |||| ||| | || ||||| || | || Sbjct 160619 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAGTATCAAACGCTGCTG--CTCGGGGA 160676 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||| || || || |||| | ||| ||||| Sbjct 160677 ATGCCTTCCTTGTCTTGAATTTTGGCCTTCACATTGTCTATTGTGTCAGAACTCTCAATC 160736 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || ||||| | |||||| |||||||||||||| Sbjct 160737 TCCAAGGTGATAGTCTTCCCCGTCAAAGTCTTAACAAAGATCTGCAT 160783 >seq53084 Length=45269 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| ||| ||||| ||||| || || | ||| |||| |||| ||| Sbjct 6789 ACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTCC 6730 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||||||||| || || || || |||||||| | || | || |||||||| Sbjct 6729 AGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGG 6670 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || || || || || | ||| ||||| || Sbjct 6669 ATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTA 6610 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 ||||| || || ||||| ||||||||||| |||| Sbjct 6609 CCCGTTAGGGTTTTCACGAAGATCTGCATCTTCG 6576 >seq51232 Length=1783 Score = 102 bits (112), Expect = 5e-17 Identities = 153/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| || | |||| ||| |||||||||||||| || | ||| |||| |||| || | Sbjct 651 CAAGATGGAGTGTGGATTCCTTCTGAATGTTATAATCAGTAAGTGTTCGACCATCCTCGA 592 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC--GGCACCCCCTCCTTGTCGCT 34891 | |||||||| ||||| || | | ||| || ||| | | | || |||||||| Sbjct 591 GTTGTTTTCCAGCAAAAATCAACCTTTGTTGATCTAGNTAGAAATTCCTTCCTTGTCTTG 532 Query 34892 AATCTTCTGTTTGACGGATG-CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| | || | || | ||| |||||| |||| |||||||| | Sbjct 531 AATCTT-TGTTTTAACATTGTCAATAGTGTCAGAACTCTCAACCTCGAGTGTTATGGTCT 473 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATAT 34983 |||| ||||| ||||| |||||||| ||||||| Sbjct 472 TTCCAGTGAGGGTCTTAACAAAGATTTGCATAT 440 >seq24017 Length=104150 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||||||||| |||||||| || | |||| | || |||| |||||||| Sbjct 1960 GTGAAGGGTGGATTCTTTCTGGATGTTATAATCTGCAAGGGTACGACCATCCTCCAGCTG 2019 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || | | ||||| ||| | || | ||||||||||| |||||| Sbjct 2020 CTTACCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGAATCTT 2079 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 ||| || || |||| || ||| | ||| || || | || || || || | Sbjct 2080 TGCTTTCAC--AT--TATCAATAGTATCAGAGCTCTCCACCTCCAAAGTGATAGTCTTCC 2135 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||||||| ||||| |||||||| Sbjct 2136 CAGTTAGAGTCTTGACAAATATCTGCAT 2163 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||| || | ||| |||||||| || || || || | | Sbjct 2165 CCTCCCCTCAAACGGAGAACCAAATGCAACGTGGACTCTTTCTGGATATTGTAATCAGCA 2224 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | |||| || ||||| || || ||||| || | ||| ||||| ||| | || Sbjct 2225 AGGGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 2284 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||| || || || |||||| || ||| | || | ||| || || Sbjct 2285 ATCCCTTCTTTATCTTGGATCTTCGCCTTTACGTTATCAATTGTATCAGAACTTTCGACC 2344 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || || || || || | ||||||||||||||||||||| Sbjct 2345 TCCAAGGTGATCGTCTTCCCTGTCAATGTCTTCACAAAGATCTGCATA 2392 >seq19239 Length=237608 Score = 95.1 bits (104), Expect = 8e-15 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| ||||||| || | ||||||||||| ||||| ||| ||||||||| || || Sbjct 131801 AATCATAGTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATT 131860 Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864 || || | || |||| |||| |||| ||||||||| ||||| || || | ||||| Sbjct 131861 GTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTG 131920 Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888 ||| | || | ||| || ||||| Sbjct 131921 GTCAGGAGGTATCCCTTCTTTGTC 131944 >seq19970 Length=23264 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || || | ||| |||| |||| || || |||||||| ||||| Sbjct 123 TTCCTTCTGAATATTGTAATCAGCAAGTGTTCGACCATCTTCAAGTTGTTTTCCAGCAAA 182 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| | ||| || ||| | || | || |||||||| ||| || ||||| | Sbjct 183 AATTAACCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTTT-TGTTTTAACAT 241 Query 34910 TG-CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | || | || | |||||| |||| || ||||||||||| || || ||||| | Sbjct 242 TGTCAATAGTGTCGGAGTTCTCAACCTCGAGTGTAATGGTTTTTCCAGTTAGTGTCTTAA 301 Query 34969 CAAAGATCTGCAT 34981 ||||||| ||||| Sbjct 302 CAAAGATTTGCAT 314 >seq21203 Length=98475 Score = 91.5 bits (100), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||||||||| | ||||||||| | ||||| || ||||||||||||||| Sbjct 50935 ATCATAGTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTG 50994 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || | ||| | || |||| ||||||||||| || ||||| || |||| ||||| Sbjct 50995 TAATCAGCCAGGGTCCGCCCATCTTCCAGCTGTTTCCCAGCAAAAATCAGTCTCTGCTGA 51054 Query 34866 TC 34867 || Sbjct 51055 TC 51056 >seq368176 Length=2289 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | ||| |||| | || || ||||| |||||||| || Sbjct 887 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAA 946 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||| ||||| || ||||| ||| || || Sbjct 947 ATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTGGATCTTGGCTTTCAC--AT 1004 Query 34911 GCTATCGATTCAC-CGGC---CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | |||||| ||| |||||| || | ||| || ||||| ||||| || || || Sbjct 1005 --TGTCGATTGTGTCGGAAGACTCAACCTCAAGGGTGATTGTTTTACCCGTTAGGGTTTT 1062 Query 34967 CACAAAGATCTGCATATTCG 34986 || ||||||||||| |||| Sbjct 1063 GACGAAGATCTGCATCTTCG 1082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 320955635933496