Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq58517 102 2e-16 >seq58517 Length=12768 Score = 102 bits (112), Expect = 2e-16 Identities = 312/473 (66%), Gaps = 16/473 (3%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||||||||||| | || ||| | || ||| || || || |||||| || Sbjct 8306 AGCAGGAAAACTTGATCCTGTGATCGGTAGGGATGAAGAAATTCGAAGAG-TAATTCGGA 8248 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 || | || | | || || || ||| ||||| ||| ||||||| || ||||||||||| Sbjct 8247 TTTTGTCGAGGAGGACGAAGAATAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAA 8190 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | | ||||| || |||||||| | || | | || ||||| || | | | Sbjct 8189 AACAGCAGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGCGATGTCCCGAGTAATTT 8130 Query 150484 GAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 | |||||| | || | | ||| ||||||| ||||| | |||||| | || ||| | Sbjct 8129 GGCTGATGTTAGACTTATAGCATTGGATATGGGAGCATTAATTGCTGGAGCAAAATATAG 8070 Query 150544 TGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG-- 150599 |||||||| ||||| | || || || || || | ||| || ||||| || | Sbjct 8069 AGGTGAATTTGAAGAGAGGTTGAAGGCA--GTGTTAAAGGAAGTAGAAGAAGCAGAAGGG 8012 Query 150600 -ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGC 150658 | || || || || || ||||| || || || | ||||||||| |||| | Sbjct 8011 AAGGTGATCCTTTTTATTGATGAGATTCACTTGGTTTTAGGTGCTGGTAGGACT---GAA 7955 Query 150659 GGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTC 150718 || ||| ||||| |||| |||| || || || || | || || | | | Sbjct 7954 GGGTCTATGGATGCTGCCAATTTGTTTAAGCCAATGCTTGCTAGGGGCCAATTAAGGTGC 7895 Query 150719 ATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 || ||||||||||| ||| || ||| | || | | ||||| ||||| || Sbjct 7894 ATTGGTGCAACAACTCTCGAGGAGTATAGGAAGTATGTCGAAAAGGATGCTGC 7842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1133921921616286