Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq22395 98.7 8e-16 seq10275 87.8 2e-12 seq19970 82.4 6e-11 >seq22395 Length=162664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| |||||||| |||||||| || ||| || || Sbjct 26861 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 26802 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || | ||| || || || || ||||| | || ||| || Sbjct 26801 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 26742 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| ||||||||||| || || || ||||| ||| || || | || ||||| || Sbjct 26741 ACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 26682 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| || || |||||||| || Sbjct 26681 TATTCAGAAGGAGTCTACTCTCCA 26658 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| ||||| || ||||||||||| ||| || || Sbjct 27317 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 27258 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||||| || || || || | || ||| || Sbjct 27257 GGACACAATTGATAATGTTAAGGCAAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 27198 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || || || || || ||||| |||||| | ||| |||| |||||||| Sbjct 27197 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACACTGGCTGATTATAA 27138 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| || || ||| | || | ||||| |||| || || Sbjct 27137 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGATTGAGAGGTGGCAT 27087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| ||||| || |||||||| || ||| ||| || Sbjct 27772 ATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGGAAGTTGAAAGCTCG 27713 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||| ||||||||||| | || ||||| Sbjct 27712 GACACCATAGACAATGTTAAGGCGAAAATACAAGACAAAGAGGGTATCCCACCGGATCAG 27653 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || || |||||||||||| ||| | || |||||||| Sbjct 27652 CAGAGGCTGATATTTGCAGGGAAGCAATTGGAAGATGGGCGTACTCTCGCAGATTATAAT 27593 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || || ||||| ||| Sbjct 27592 ATTCAAAAGGAGTCAACTCTCCAC 27569 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 110706 ATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCG 110647 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || | ||| |||||| ||||| ||||| | || ||||| Sbjct 110646 GATACGATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAGGGTATCCCACCTGATCAG 110587 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| || || ||||| |||||| | |||| |||| ||||||||| Sbjct 110586 CAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAAC 110527 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || || ||||| || || ||| Sbjct 110526 ATCCAGAAGGAATCCACCCTTCAC 110503 >seq10275 Length=89473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| || || |||| ||| Sbjct 10212 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 10153 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || ||||| ||||| | ||| ||||| Sbjct 10152 GATACTATTGACAATGTGAAAGCTAAGATTCAG-GACAAGGAGGGTATTCCCCCGGATCA 10094 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || ||||||||||| || |||||||||||| ||| | || ||||| || Sbjct 10093 GCAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAA 10034 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| || || || || |||||| Sbjct 10033 CATTCAGAAGGAGTCCACCCTGCAC 10009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| |||| || ||||| || ||| ||| ||| || Sbjct 10896 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 10837 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || ||||| || ||| | || ||||||| Sbjct 10836 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAA 10777 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || || ||||||||| ||| | || ||||| ||| Sbjct 10776 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTAGCTGATTACAAC 10717 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || ||||| ||||| ||| |||| Sbjct 10716 ATCCAGAAGGAATCAACTCTTCACTTGGT 10688 >seq19970 Length=23264 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||| |||| || ||||||||||| ||| || || Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || |||||| ||||| || ||| | || ||||||| Sbjct 254 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 195 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | || ||||| || |||||| | |||||| | ||| | || ||||| || Sbjct 194 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAAT 135 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| || ||||| ||||| || Sbjct 134 ATTCAGAAGGAATCCACTCTCCA 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420585140026053