Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8121 120 4e-22 seq254151 107 2e-18 seq14524 102 1e-16 seq14338 95.1 1e-14 >seq8121 Length=344380 Score = 120 bits (132), Expect = 4e-22 Identities = 248/366 (68%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || || || ||||| || ||| || | || |||||| Sbjct 277879 CCAGGGACAGGGAAGACATTGCTAGCTAAGGCGATCGCCGGAGAAGCAGAGGTTCCATTC 277820 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| || | || || |||||||||||||||||||| || || ||| Sbjct 277819 TTATCTCTCTCTGGTTCAGAGTTCGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 277760 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | || | || | | || |||||| ||| | | | ||||| |||||||||||| Sbjct 277759 AGGGACTTATTCAACAAGGCAAAGGAAAATTCACCTTCTTTAGTCTTTATTGATGAGATT 277700 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | |||| | | ||||| | | |||||| || ||||| || Sbjct 277699 GATGCTGTTGGGAGGCAAAGAGGAACTGGTATTGGTGGTGGAAATGATGAAAGAGAGCAG 277640 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTG 175611 ||| |||| ||||| ||||| || |||||||| ||| || || | ||||| | | Sbjct 277639 ACACTTAACCAACTTCTCACTGAAATGGATGG-TTTCACTGGAA--ACACTGGAGTCATT 277583 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| ||||||||| | || || |||||| | || | ||||| || || | Sbjct 277582 GTCATTGCTGCCACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTCGACCTGGAAGA 277523 Query 175672 TTTGAT 175677 |||||| Sbjct 277522 TTTGAT 277517 >seq254151 Length=6888 Score = 107 bits (118), Expect = 2e-18 Identities = 280/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| | || || ||| | ||| | |||||||| | || | ||||| | | | || || Sbjct 5001 GAGGTCGTAGAATTTTTGAAGAAGCCCGAGAGGT-TTACCGCAGTGGGGGCTCGTATTCC 4943 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || |||||||| || || || || Sbjct 4942 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAGACCCTGCTAGCAAAGGCAAT 4883 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | ||||| ||||||| Sbjct 4882 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTTGTTGAGATGT 4824 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || || ||||| || | | ||| |||||| | Sbjct 4823 TTGTTGGTGTAGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 4764 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 4763 CCTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 4704 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || ||||| || || ||||| || | || |||||| | || || ||||| || Sbjct 4703 GAGG--AGGGAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACAGAAATGGACGG 4646 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 4645 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 4586 >seq14524 Length=135311 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||||| || |||||||||| ||||||||||||||| | || || | || | | Sbjct 89122 GACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAGATT 89063 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | || | | | |||| ||||| ||||| | ||| | || | | || ||||| Sbjct 89062 C-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGATCCA 89004 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | ||| || |||| |||||| | |||||||| | |||||| ||| | ||||| Sbjct 89003 CAAGGATGATGTTGAATCTGTCATCAAGACATACCATTTGATGTCTCAACGATGGTTCAC 88944 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | ||||| | || |||||||| || |||||||| || Sbjct 88943 TCATGCATCTCCAACATTATTTAATGCTGGAACTCCAAGACCTCA 88899 >seq14338 Length=69158 Score = 95.1 bits (104), Expect = 1e-14 Identities = 193/283 (68%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || ||||| || | || |||| | || ||||| || ||| ||||| Sbjct 28923 CCTGGTACTGGTAAGACACTTTTGGCTAGAGCAGTAGCTGGTGAGGCAGGTGTGCCATTT 28864 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || || Sbjct 28863 TTCTCATGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTCGGTGTGGGAGCTTCTAGAGTA 28804 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 28803 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG-CCTTGTATTGTGTTTATTGATGAGAT 28745 Query 175494 TGATGCGGTGGGCAAGCAACG-----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAG 175547 |||||| || || | |||| | ||| ||| || ||| | |||||| ||||| Sbjct 28744 TGATGCTGTTGGAAGGCAAAGAGGGGCAGGGCTTGGAGGT------GGAAATGATGAGAG 28691 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || || ||||||||||| | || || |||||||| ||| Sbjct 28690 GGAGCAGACTATTAATCAACTGTTGACAGAAATGGATGGGTTT 28648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589637409048160