Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq22395 122 1e-22 seq24017 116 5e-21 seq19970 116 5e-21 seq20754 114 2e-20 seq914224 102 1e-16 seq10275 100 4e-16 seq1350 95.1 2e-14 >seq22395 Length=162664 Score = 122 bits (134), Expect = 1e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| ||||| || ||||| |||||||| ||||| || || Sbjct 110935 AATGCAAATCTTTGTTAAAACCTTGACCGGGAAAACAATTACATTGGAAGTTGAGAGCTC 110876 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| || || || ||||| |||||||| ||||| || || || || || Sbjct 110875 GGACACTATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 110816 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| |||||| ||| || ||||| | |||||| | ||| | |||||||||| Sbjct 110815 ACAAAGGCTGATTTTTGCGGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 110756 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| || ||| ||| | || || || |||| Sbjct 110755 TAT-TCAAAAGGAGTCAACACTCCACCTAGT 110726 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 155816 TAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCG 155874 ||||| | ||||| || ||| ||||||| || ||||||||||| || ||| | ||||| | Sbjct 27780 TAATACAGATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGGAAGTTG 27721 Query 155875 AAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTC 155934 || || || | || || || || ||||||||||| ||||| || || || | Sbjct 27720 AAAGCTCGGACACCATAGACAATGTTAAGGCGAAAATACAAGACAAAGAGGGTATCCCAC 27661 Query 155935 CAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAG 155994 | || || || || |||| | ||| || ||||| | |||||| | ||| | ||| Sbjct 27660 CGGATCAGCAGAGGCTGATATTTGCAGGGAAGCAATTGGAAGATGGGCGTACTCTCGCAG 27601 Query 155995 ATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 |||||||||| || ||| ||| | || || || |||| | || |||| || || Sbjct 27600 ATTATAATAT-TCAAAAGGAGTCAACTCTCCACCTAGTTCTCAGGCTAAGGGGTGG 27546 Score = 93.3 bits (102), Expect = 6e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| || || |||||||| || ||||||||||| || || Sbjct 26861 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 26802 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || ||||| || || || ||||| || || || || ||||| || Sbjct 26801 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 26742 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | || | ||| || |||||| | || ||| || || | ||||||| || Sbjct 26741 ACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 26682 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || || ||| | ||| Sbjct 26681 TATTCAGAAGGAGTCTACTCTCCATCTTGTG 26651 Score = 89.7 bits (98), Expect = 7e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || || ||||||||||| || || || ||||| || || Sbjct 110706 ATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCG 110647 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||||| ||||| || || || || || || || || Sbjct 110646 GATACGATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAGGGTATCCCACCTGATCAG 110587 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || ||||| | |||||| |||||| | | |||||||| Sbjct 110586 CAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAAC 110527 Query 156003 AT 156004 || Sbjct 110526 AT 110525 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || || || || || || || ||| Sbjct 110478 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACAATAACGTTGGAGGTGGAGAGTTCC 110419 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || ||||| ||||| || || || || ||||| || Sbjct 110418 GATACCATTGATAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAG 110359 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||||| ||| || || || | |||||| || ||| | ||||||||||| Sbjct 110358 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAAT 110299 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 110298 AT-TCAAAAG 110290 >seq24017 Length=104150 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| || || || || || || || |||||| |||| Sbjct 2391 ATGCAGATCTTTGTGAAGACATTGACAGGGAAGACGATCACCTTGGAGGTCGAAAGTTCT 2332 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || |||||||||||||| || || ||||| || Sbjct 2331 GATACAATTGATAACGTAAAGGCGAAGATCCAAGATAAAGAAGGGATTCCACCAGATCAG 2272 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| ||||||||||| || ||| || || | | ||||| ||| Sbjct 2271 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACCCTTGCTGATTACAAT 2212 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | ||| | ||||| || Sbjct 2211 ATCCAGAAAGAGTCCACGTTGCATTTGGT 2183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | ||||| || ||||| || || || || || ||| Sbjct 2163 ATGCAGATATTTGTCAAGACTCTAACTGGGAAGACTATCACTTTGGAGGTGGAGAGCTCT 2104 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| || || || || || || || || || ||||| || Sbjct 2103 GATACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCCCCAGATCAG 2044 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| | || | |||||||||| Sbjct 2043 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAAC 1984 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || ||||| | || ||||| Sbjct 1983 ATCCAGAAAGAATCCACCCTTCA 1961 >seq19970 Length=23264 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| ||| | ||||||||||| |||||| | || || || | || Sbjct 314 ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCC 255 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || |||| ||||| ||||| || ||||| || |||||||| ||| Sbjct 254 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 195 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| || |||| ||| || || || || |||||| |||| | | ||||| ||| Sbjct 194 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAAT 135 Query 156003 AT 156004 || Sbjct 134 AT 133 >seq20754 Length=265263 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| ||||||||||| || || || || || ||| Sbjct 216377 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAGAGTTCG 216318 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||| || ||||| || || ||||| || Sbjct 216317 GACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGGATTCCCCCAGACCAG 216258 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || ||||| || |||||| || || | | |||||||| Sbjct 216257 CAGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATAAC 216198 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || ||| ||||||||||| | || || | || || || ||| Sbjct 216197 ATACAGAAGGAGTCGACGCTTCATCTGGTTTTGCGTTTGAGGGGAGGT 216150 Score = 105 bits (116), Expect = 1e-17 Identities = 138/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| ||||| || || || || ||||| || ||| Sbjct 216149 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 216090 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||||| ||||| || ||||||||||| || || ||||| || Sbjct 216089 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCAG 216030 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | || | ||||||| ||| Sbjct 216029 CAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAAT 215970 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 215969 AT-TCAAAAG 215961 Score = 100 bits (110), Expect = 4e-16 Identities = 137/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | ||||||||||| ||||| | || || || ||| Sbjct 217061 ATGCAGATCTTTGTAAAGACACTCACTGGAAAAACCATTACTCTCGAGGTTGAGAGTTCA 217002 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||| || ||||| || || ||||| || Sbjct 217001 GACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGGATTCCCCCAGACCAG 216942 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || |||||||| |||||| | ||||| | | ||||| ||| Sbjct 216941 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCTGATTACAAT 216882 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 216881 AT-TCAAAAG 216873 >seq914224 Length=857 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| ||||| |||||||| | || || || ||| Sbjct 507 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCC 566 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| |||||| || |||||||||||||| |||||||| || Sbjct 567 GATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 626 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | || || ||||| || || ||| Sbjct 627 CAGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGAT 662 >seq10275 Length=89473 Score = 100 bits (110), Expect = 4e-16 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 155810 TTTATGTA-ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 ||| |||| ||| | ||||| || || ||||||| | |||||||| || || || | Sbjct 11139 TTTCTGTATATACAGATGCAGATCTTCGTTAAAACCCTAACTGGAAAGACCATAACCCTT 11080 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 || || ||| || || | |||| ||||| || ||| || || || |||||||| Sbjct 11079 GAGGTTGAAAGCTCCGACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGA 11020 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || || || || || ||||| ||||| | ||||| |||||||||||||| |||||| Sbjct 11019 ATCCCACCGGACCAGCAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCAGAACC 10960 Query 155988 TTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 || | || || | | ||||||| || |||| ||||| || ||| Sbjct 10959 CTAGCCGACTACA--ACATCCAAAAGGAATCGACCCTTCACTTGGTG 10915 >seq1350 Length=82824 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || || || || ||||| || || Sbjct 7995 ATGCAGATCTTTGTGAAGACATTGACTGGGAAGACAATCACCTTGGAAGTGGAGAGCTCA 7936 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || ||||| ||||| |||||||| || ||||| || Sbjct 7935 GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATTCCACCAGATCAG 7876 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | || | |||| || ||| Sbjct 7875 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACGCTTGCAGACTACAAT 7816 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || |||||| | ||| Sbjct 7815 ATCCAGAAAGAGTCTACTCTTCATCTCGTG 7786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723367583321200