Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_021779.1 Length=59746 Score E Sequences producing significant alignments: (Bits) Value seq464964 86.0 2e-12 >seq464964 Length=1981 Score = 86.0 bits (94), Expect = 2e-12 Identities = 172/246 (70%), Gaps = 17/246 (7%) Strand=Plus/Minus Query 11784 ATCACCGACTATGACCGTATCGACGACGACATCGGCGGCGACGGTAACGCCTTCGACCTC 11843 ||||||||||| ||||| ||||| || ||||||| ||| || || |||||||||||||| Sbjct 1936 ATCACCGACTACGACCGAATCGAGGATGACATCGACGGGGAGGGCAACGCCTTCGACCTG 1877 Query 11844 GCATCAAAACGTACGACGACCTTCGGGTCGTTTGCCATGTGTGCGGCCGAGTCCTCGCCA 11903 | || || || || || |||| |||||| || ||| ||| |||||| || Sbjct 1876 TCCTCGAAGCGCACCACCACCTACGGGTCAAACGCGATGACCCTGGCAGAGTCCAGCCCG 1817 Query 11904 TCACGTCCGATTAAAGACCCGA--ACTGGATTAAG-CGT-AC--GCCGCACGAAGCCCCG 11957 || || ||| | |||| || || ||| ||| || ||| || | ||||| Sbjct 1816 TCGCGCGAGATCA-----CCGATTACAAGA--AAGTCGTGACCGGCCACATG--GCCCCT 1766 Query 11958 CCATGCGA-CGGGATTGTCGGGTTATACAACCGTGGCGACCGCCGACGCTGGAAATGGCC 12016 || ||| ||| || | | | | ||||| ||||| ||||||||||||||| | ||||| Sbjct 1765 CC-CACGACCGGCATCCTGGCGCTCTACAATCGTGGGGACCGCCGACGCTGGCACTGGCC 1707 Query 12017 GTGTCC 12022 || || Sbjct 1706 TTGCCC 1701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188956410959272