Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_021780.1 Length=59454 Score E Sequences producing significant alignments: (Bits) Value seq464964 87.8 7e-13 >seq464964 Length=1981 Score = 87.8 bits (96), Expect = 7e-13 Identities = 175/253 (69%), Gaps = 15/253 (6%) Strand=Plus/Plus Query 47454 CGCAATGCGGACACGGCCATTTCCAGCGGCGGCGGTCGCCACGATTGTACAGCCCGACAA 47513 |||| | || || ||||| | |||||| |||||||| ||||||||||| ||| | | | Sbjct 1693 CGCATTCGGGGCAAGGCCAGTGCCAGCGTCGGCGGTCCCCACGATTGTAGAGCGCCAGGA 1752 Query 47514 TCCCATCACACGGCGGGGCTTCGTGCGGC--GT-ACG-CTTGATCCAGT--TCGGGTCTT 47567 | || || ||||| | || ||| || ||| ||| || || |||| Sbjct 1753 TGCCGGTCGTGGGAGGGGC--CATGTGGCCGGTCACGACTT--TCTTGTAATCGG----- 1803 Query 47568 TAATCGGGCGCGATGGCGATGACTCGGCCGCACACATGGCAAACGACCCGAAGGTCGTCG 47627 | ||| |||||| || ||||| ||| ||| || |||||| |||| || | Sbjct 1804 TGATCTCGCGCGACGGGCTGGACTCTGCCAGGGTCATCGCGTTTGACCCGTAGGTGGTGG 1863 Query 47628 TACGTTTTGATGCGAGGTCGAAGGCGTTACCGTCGCCACCGATGTCGTCGTCGATACGGT 47687 | || || || | |||||||||||||| || || || ||||||| || ||||| |||| Sbjct 1864 TGCGCTTCGAGGACAGGTCGAAGGCGTTGCCCTCCCCGTCGATGTCATCCTCGATTCGGT 1923 Query 47688 CGTAGTCGGTGAT 47700 ||||||||||||| Sbjct 1924 CGTAGTCGGTGAT 1936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188032325878544