Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq508016 149 8e-30 seq21867 93.3 5e-13 seq16126 93.3 5e-13 >seq508016 Length=803 Score = 149 bits (164), Expect = 8e-30 Identities = 196/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || |||||||| || || ||||| ||||||||||| || || | | |||| || |||||| Sbjct 530 GAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGG 471 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||||| ||||| || ||||||||||| |||||||||| Sbjct 470 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 411 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||| || |||| || || | ||| || | || | ||||||| | Sbjct 410 AAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGAGTTAGGGTTTCCCAGTGACGG 351 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 || || | | || || ||||| || ||||||| ||||| ||| ||||||||| Sbjct 350 GTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 291 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||| | ||| |||| | || ||||| Sbjct 290 ATTTCCCAAATTTGTGGGTATTGAATTGGGAA 259 >seq21867 Length=43609 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| | |||||||| |||||| ||||| || || ||||||| || Sbjct 23567 GCTGCTAACTATTTGAACATCAAGAGTCTGCTTGATCTCACTTGTCAGACTGTGGCAGAC 23508 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 23507 ATGATCAAGGGGAAAACTCCGGAGGAGATCCGCAAGACCTTCAACATCAAG 23457 >seq16126 Length=54524 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| | |||||||| |||||| ||||| || || ||||||| || Sbjct 41277 GCTGCTAACTATTTGAACATCAAGAGTCTGCTTGATCTCACTTGTCAGACTGTGGCAGAC 41336 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 41337 ATGATCAAGGGGAAAACTCCGGAGGAGATCCGCAAGACCTTCAACATCAAG 41387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6030851296230419