Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq22395 102 6e-17 seq20754 95.1 1e-14 seq10275 95.1 1e-14 seq1350 91.5 1e-13 seq914224 89.7 4e-13 >seq22395 Length=162664 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || ||||| ||||||||||| || | ||| ||| ||| Sbjct 110251 AATGCAAATCTTTGTTAAGACCTTAACTGGCAAAACCATCACATTGGAAGTTGAGAGCTC 110192 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || | | | | | || || ||||| ||||||||||| | || ||| | Sbjct 110191 A-GACATGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 110133 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||| ||||||| | | ||| |||||||||||| Sbjct 110132 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACA 110073 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | || || ||||||||||| | || | ||| |||| || | || ||| Sbjct 110072 ATATCCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 110023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| ||||| || |||||||| || | ||| ||| ||| Sbjct 26861 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 26802 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || |||||| ||||| || || | || || | Sbjct 26801 A-GACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACC 26743 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| ||||| | ||| || || ||| ||||||| | | ||| | || || |||| Sbjct 26742 AACAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACA 26683 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | ||||| ||||||||||| | || | ||| |||| || | || ||| Sbjct 26682 ATATTCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 26633 >seq20754 Length=265263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||||||||| ||||| || ||||| || | ||| |||| ||| Sbjct 216149 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 216090 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || || ||| ||||||||||| | || ||||| Sbjct 216089 -GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCA 216031 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||||||||| | || | || || ||||| Sbjct 216030 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 215971 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||| || || | ||| | ||| Sbjct 215970 TATTCAAAAGGAATCCACACTCCACCTTGTG 215940 >seq10275 Length=89473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||||||||| |||| || ||||| || ||| | ||| || ||| Sbjct 10440 ATGCAGATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 10381 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | | || || |||||| || || ||||| | || ||||| Sbjct 10380 -GACACTATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 10322 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| ||||||||| |||| || | | ||| | || || ||||| Sbjct 10321 GCAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGAACCCTAGCTGATTACAA 10262 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || |||||| | ||| Sbjct 10261 CATCCAGAAGGAGTCGACTTTGCACCTTGTG 10231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || || |||||||| || | || ||| | Sbjct 10212 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 10153 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || ||| |||||| || || || || | ||| ||||||| Sbjct 10152 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 10093 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | |||||| || || |||| || | ||| | || || |||||| Sbjct 10092 CAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAAC 10033 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| |||||||| || ||||| Sbjct 10032 ATTCAGAAGGAGTCCACCCTGCAC 10009 >seq1350 Length=82824 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | ||| || | Sbjct 8451 ATGCAGATCTTTGTCAAGACACTTACCGGCAAGACCATCACCCTTGAAGTTGAAAGTTCA 8392 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | ||||| ||||||| || || ||||| | || ||| ||| Sbjct 8391 GATACTATTGACAATGTAAAGGCAAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAG 8332 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || || || ||||| | | ||| |||| || |||||| Sbjct 8331 CAGAGACTGATCTTTGCCGGGAAGCAACTTGAGGATGGGAGGACATTGGCAGATTACAAC 8272 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || ||||| || |||| Sbjct 8271 ATTCAGAAAGAGTCAACCCTGCA 8249 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| ||||| || || || || || || | || ||| | Sbjct 8223 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACAATAACTTTGGAGGTTGAGAGTTCT 8164 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| || || || || | || || ||| Sbjct 8163 GATACCATTGACAATGTCAAAGCAAAGATTCAAGACAAGGAGGGTATCCCGCCAGACCAG 8104 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| |||||||| |||||||||| || || | |||||||| ||| Sbjct 8103 CAGCGTTTGATCTTTGCTGGTAAACAACTGGAGGACGGCAGGACTCTTGCGGACTATAAC 8044 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || || |||||||| || | || |||| ||| | || |||||| Sbjct 8043 ATCCAGAAGGAGTCGACTCTCCATTTGGTCTTGCGTTT--GAGGGG 8000 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || ||||| || || | || || || |||||||| | || ||| Sbjct 8913 TTTCAGATGCAGATCTTTGTTAAGACACTCACCGGAAAGACCATTACTCTTGAGGTCGAG 8854 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | || || | | | | || ||| |||||| || || |||||| | || Sbjct 8853 AGTTCTGACACCATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCT 8794 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| || |||||||| || || | | ||| | || ||| Sbjct 8793 GATCAGCAGAGGCTGATCTTTGCTGGAAAACAGCTTGAAGATGGCCGAACTCTTGCTGAC 8734 Query 107730 TACAACATTCAAAAGGAGTCTAC 107752 |||||||| |||||||||||||| Sbjct 8733 TACAACATCCAAAAGGAGTCTAC 8711 >seq914224 Length=857 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || | || ||||||||||| ||| |||| ||| | | Sbjct 51 ATGCAAATCTTTGTTAAGACCCTCACTGGCAAAACCATCACCCTCGAGGTTGAGAGTTCC 110 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || |||||| ||||| ||||| | || |||||| Sbjct 111 GACACTATCGACAATGTTAAGGCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 170 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || | || | ||| || || ||| | ||||| | | ||| | || |||||||| Sbjct 171 CAAAGGTTGATCTTTGCTGGAAAGCAGTTAGAGGATGGCCGAACTCTTGCTGACTACAAT 230 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||||||||| Sbjct 231 ATCCAAAAGGAGTCTAC 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394357691265223