Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq19970 125 1e-23 seq131271 118 2e-21 seq22395 109 9e-19 seq914224 105 1e-17 seq20754 87.8 3e-12 seq1350 86.0 1e-11 >seq19970 Length=23264 Score = 125 bits (138), Expect = 1e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||| |||| |||||||| ||||| | || || || | || Sbjct 313 TGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAGGTTGAGAACTCCG 254 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| |||| ||||| ||| || ||||| ||||| || ||||||| Sbjct 253 ACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAAC 194 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | |||||||| || |||||| | || ||| | |||| | | ||||| |||| Sbjct 193 AAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAATA 134 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || ||||| ||| ||||| | || || || Sbjct 133 TTCAGAAGGAATCCACTCTCCATCTTGTGTTGCG 100 >seq131271 Length=1147 Score = 118 bits (130), Expect = 2e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||| |||| ||||| || ||||| | || || || | || Sbjct 106 TGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTGAGAACTCCG 165 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| |||| ||||| ||| || ||||| ||||| || ||||||| Sbjct 166 ACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGG-ATTCCTCCAGATCAAC 224 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | |||||||| || |||||| | || ||| | |||| | | ||||| |||| Sbjct 225 AAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACAATA 284 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || || ||||| ||| ||||| | || || || | | |||||| Sbjct 285 TTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGT 331 >seq22395 Length=162664 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || || ||||||||||| | || || || | Sbjct 110933 TGCAAATCTTTGTTAAAACCTTGACCGGGAAAACAATTACATTGGAAGTTGAGAGCTCGG 110874 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || ||||| ||| ||| ||||| |||||||| || |||| Sbjct 110873 ACACTATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAAC 110814 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || |||||||| || || ||||| || ||| | || | |||||||||||| Sbjct 110813 AAAGGCTGATTTTTGCGGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAATA 110754 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || || |||| |||| Sbjct 110753 TTCAAAAGGAGTCAACACTCCACCTAGT 110726 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| ||||| |||||||| || || | || || ||| | Sbjct 27771 TGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGGAAGTTGAAAGCTCGG 27712 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||||||||| ||||| || || ||||| ||||| | Sbjct 27711 ACACCATAGACAATGTTAAGGCGAAAATACAAGACAAAGAGGGTATCCCACCGGATCAGC 27652 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||| || ||||| || ||| | || | |||||||||||| Sbjct 27651 AGAGGCTGATATTTGCAGGGAAGCAATTGGAAGATGGGCGTACTCTCGCAGATTATAATA 27592 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || ||| |||| |||| Sbjct 27591 TTCAAAAGGAGTCAACTCTCCACCTAGT 27564 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || || || ||||| || | || || || | || Sbjct 110477 TGCAGATCTTTGTGAAGACTTTGACGGGGAAGACAATAACGTTGGAGGTGGAGAGTTCCG 110418 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || ||||| ||| || || || ||||| || || | Sbjct 110417 ATACCATTGATAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAGC 110358 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| ||||||||||| |||||||| || ||| || || | |||||||||||| Sbjct 110357 AGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAATA 110298 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 110297 TTCAAAAGGAATCCAC 110282 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||| || | || || || | Sbjct 110705 TGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 110646 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || ||||| ||| || || || || ||||| ||||| | Sbjct 110645 ATACGATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAGGGTATCCCACCTGATCAGC 110586 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| || || |||||||| ||| ||||| | | |||||||| | Sbjct 110585 AGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAACA 110526 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 110525 TCCAGAAGGAATCCAC 110510 >seq914224 Length=857 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| || |||||||| || ||||| |||| || || | || Sbjct 508 TGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCCG 567 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| |||||| || ||||||||||||||| || ||||| | Sbjct 568 ATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAGC 627 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || || || || || ||| | || ||| | | || | | || || |||| Sbjct 628 AGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACAATA 687 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| ||||| Sbjct 688 TTCAGAAGGAATCCACTCTCCAT 710 >seq20754 Length=265263 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || ||||||||||| || || | || || || | | Sbjct 216376 TGCAAATCTTCGTCAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAGAGTTCGG 216317 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || || ||||| ||| || ||||| ||||| || || || | Sbjct 216316 ACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGGATTCCCCCAGACCAGC 216257 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || |||||||| || ||| | || ||| || || | | |||||||| | Sbjct 216256 AGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATAACA 216197 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||| || || ||||| | ||| | || || || || || ||||||| Sbjct 216196 TACAGAAGGAGTCGACGCTTCATCTGGTTTTGCGTTTGAGGGGAGGTA 216149 >seq1350 Length=82824 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | || ||||| || || || ||||| || | || || || | | | Sbjct 7994 TGCAGATCTTTGTGAAGACATTGACTGGGAAGACAATCACCTTGGAAGTGGAGAGCTCA- 7936 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || ||||| ||| |||||||||||||| ||||| Sbjct 7935 GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATTCCACCAGATCAG 7876 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || ||||| ||||| || | || ||| | | ||| | |||| || ||| Sbjct 7875 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACGCTTGCAGACTACAAT 7816 Query 146211 ATACAAAAAGAATCGACTATCCAT 146234 || || ||||| || ||| | ||| Sbjct 7815 ATCCAGAAAGAGTCTACTCTTCAT 7792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777031077642440