Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq342582 82.4 1e-10 >seq342582 Length=10829 Score = 82.4 bits (90), Expect = 1e-10 Identities = 188/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 193803 GGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGT 193862 |||||||||||||| || | || || || ||||| | ||||| || ||| || | || Sbjct 8816 GGGCCAACTTATTACCAGAGGCTGAAGCACATGGTGGATGATAAGATCCATTCTCGTGGT 8875 Query 193863 CATGGACAAGTGACTACT-TTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGG 193921 | ||| | ||| | | |||| | |||| || | || | |||| | |||||| Sbjct 8876 CGTGGTCCTGTGCAGATTCTTAC-TAGACAGCCTGCTGAAGGGAGATCTCGGGATGGAGG 8934 Query 193922 TTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTT 193981 || ||||||| || |||||| ||||||||| | | |||||| ||| | || ||| | Sbjct 8935 CCTACGATTTGGGGAGATGGAGCGAGACTGTATGATCGCTCATGGGGCTGCACATTTCCT 8994 Query 193982 GAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAG-AATGTG 194040 || || || ||||| | ||| ||| ||| |||| ||| ||| |||||| Sbjct 8995 CAAAGAGAGGCTGTTTGATCAAAGCGATGCTTACAGAGTTCATGTATGC-CAGCAATGTG 9053 Query 194041 GTATGATTACAAGTACT--TCTAAAAA--ATGTCAT 194072 || | ||| ||| | || |||||||| ||||||| Sbjct 9054 GTTTAATTGCAATTGCTAATCTAAAAAAGATGTCAT 9089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627796780709960