Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21203 93.3 4e-14 seq22395 87.8 2e-12 seq20754 84.2 2e-11 >seq21203 Length=98475 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||||||||| || || ||| ||| |||||| |||||||| || | Sbjct 50975 TTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATCTTCCAGCTGTTTCCCAG 51034 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC--GGTAA 132035 | | || || | ||| ||||| |||||||||||||||||||| ||||| Sbjct 51035 CAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATCCTGGTAA 51084 >seq22395 Length=162664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||||| ||||| || | |||||| ||| ||||||||||| || | Sbjct 110967 TTGACTCCTTTTGAAAATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTG 111026 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | ||| || |||||||| || || |||||||| || |||||| ||| | Sbjct 111027 CAAAGATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTGTCCTGAATTTTGGCTTTAA 111086 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||| ||||||| || | || || |||||||| || | Sbjct 111087 CATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGTCT 111146 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 111147 TCACAAATATCTGCAT 111162 >seq20754 Length=265263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| ||||| || | ||| ||| ||| || ||||| ||||| | | Sbjct 215956 GATTCCTTTTGAATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACCAGCA 216015 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| |||||||| || || ||||||||||| |||||| |||| Sbjct 216016 AATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTGGCCTTCACG 216075 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||||||| | || | || || || |||| |||||| Sbjct 216076 TTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTG 216135 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 216136 ACAAATATCTGCAT 216149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471072936152520