Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05]
929,607 sequences; 2,689,351,490 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq19970 107 2e-18
seq131271 100 3e-16
seq20754 100 3e-16
seq22395 98.7 9e-16
seq10275 95.1 1e-14
seq57534 84.2 2e-11
>seq19970
Length=23264
Score = 107 bits (118), Expect = 2e-18
Identities = 159/224 (71%), Gaps = 1/224 (0%)
Strand=Plus/Minus
Query 25163 CAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAA 25222
|||||| ||| |||||| | ||||| || ||| |||| |||||| | || || ||||
Sbjct 325 CAATTATACAG-ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAG 267
Query 25223 GTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATA 25282
|| || | ||| ||||| || | || ||| ||||||| || || || || ||
Sbjct 266 GTTGAGAACTCCGACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATT 207
Query 25283 CCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTC 25342
|| || ||||| ||||| | |||| | || |||||||| ||||||| | ||| |
Sbjct 206 CCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT 147
Query 25343 AGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||||||||||||| || |||||||| | ||| | |||||
Sbjct 146 GCTGATTACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTT 103
>seq131271
Length=1147
Score = 100 bits (110), Expect = 3e-16
Identities = 158/224 (71%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 25163 CAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAA 25222
|||||| ||| |||||| | ||||| || ||| |||| ||||| | || || ||||
Sbjct 94 CAATTATACAG-ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAG 152
Query 25223 GTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATA 25282
|| || | ||| ||||| || | || ||| ||||||| || || || || ||
Sbjct 153 GTTGAGAACTCCGACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGG-ATT 211
Query 25283 CCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTC 25342
|| || ||||| ||||| | |||| | || |||||||| ||||||| | ||| |
Sbjct 212 CCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT 271
Query 25343 AGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||||||||||||| || |||||||| | ||| | |||||
Sbjct 272 GCTGATTACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTT 315
>seq20754
Length=265263
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232
|||||| | ||||| ||||| ||||| || || ||||||| | ||||| || |||
Sbjct 216606 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTC 216547
Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292
| ||||| ||||| | ||||| ||| || || || |||||||| || || || |
Sbjct 216546 A-GATACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 216488
Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352
|||| || | || | | || |||||||| || |||| || | | |||||||
Sbjct 216487 AGCAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGATTACA 216428
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
||||||| || ||||| ||| ||||||| ||| | | |||| |||||
Sbjct 216427 ATATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 216379
>seq22395
Length=162664
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| |||||||| ||| | || || | ||||| || |
Sbjct 27316 ATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTCG 27257
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || || |||||| ||||| || ||||| ||||| || |||
Sbjct 27256 GACACAATTGATAATGTTAAGGCAAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCAG 27197
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| || || |||| || || || ||| | ||||||| |||| | ||||| ||
Sbjct 27196 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACACTGGCTGATTATAAC 27137
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| || || ||||||||| |||| | || | ||||||||||| ||
Sbjct 27136 ATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 27090
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
||||| |||||||| || || || ||||| ||||| |||| | || |||||| | |||
Sbjct 110385 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 110326
Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCA 25377
|||| || | | || ||||| ||||||||||| ||||||||| ||||
Sbjct 110325 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCA 110276
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/228 (68%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 25147 TTATATAAGTAGTTT---TCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGG 25203
||||||| | ||||| | ||||| | ||||| | ||||| ||||| ||||| ||
Sbjct 27802 TTATATAGG-AGTTTGGTTTGATTAATACAGATGCAGATCTTTGTTAAAACCTTAACTGG 27744
Query 25204 AAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAAT 25263
|||| | ||||| | ||||| ||| | || || || || | || || |||||
Sbjct 27743 AAAAACCATCACACTGGAAGTTGAAAGCTCGGACACCATAGACAATGTTAAGGCGAAAAT 27684
Query 25264 TACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACT 25323
|| ||||||||||| || || |||||||| || || || | | || || ||| |
Sbjct 27683 ACAAGACAAAGAGGGTATCCCACCGGATCAGCAGAGGCTGATATTTGCAGGGAAGCAATT 27624
Query 25324 CGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCAC 25371
||||||| | | | || ||||| ||||||||||| || || ||
Sbjct 27623 GGAAGATGGGCGTACTCTCGCAGATTATAATATTCAAAAGGAGTCAAC 27576
>seq10275
Length=89473
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
||||||| | || || ||||| ||||||| ||| | ||||| | ||||| ||| |
Sbjct 10669 CATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTC 10610
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||| ||||| || | || || ||||| ||||||||||| || || ||||| ||
Sbjct 10609 CGACACTATTGATAACGTTAAGGCGAAAATCCAGGATAAAGAGGGAATCCCACCCGACCA 10550
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|||||| || || | | ||| || ||||| ||||| | ||| || ||||||||
Sbjct 10549 GCAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGCCGAACCCTCGCTGATTACAA 10490
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| || || || || ||| |||| || ||
Sbjct 10489 CATCCAGAAGGAGTCTACCCTTCACTTGGT 10460
>seq57534
Length=59227
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| | |||||||| | ||||| |||| ||||| |
Sbjct 10977 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 10918
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | |||||| ||||| || || || || || || || ||||||
Sbjct 10917 GACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 10858
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| || || | || |||||| || || || || | | | | || |||||||||
Sbjct 10857 CAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACTCTCGCCGATTACAAC 10798
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| || || ||||| ||| |||| || ||
Sbjct 10797 ATCCAGAAGGAATCTACCCTTCACTTGGT 10769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 439922364126240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |