Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq19970 107 2e-18 seq131271 100 3e-16 seq20754 100 3e-16 seq22395 98.7 9e-16 seq10275 95.1 1e-14 seq57534 84.2 2e-11 >seq19970 Length=23264 Score = 107 bits (118), Expect = 2e-18 Identities = 159/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 25163 CAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAA 25222 |||||| ||| |||||| | ||||| || ||| |||| |||||| | || || |||| Sbjct 325 CAATTATACAG-ATGCAAATCTTTGTTAAGACACTAACTGGAAAAACCATTACACTCGAG 267 Query 25223 GTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATA 25282 || || | ||| ||||| || | || ||| ||||||| || || || || || Sbjct 266 GTTGAGAACTCCGACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATT 207 Query 25283 CCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTC 25342 || || ||||| ||||| | |||| | || |||||||| ||||||| | ||| | Sbjct 206 CCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT 147 Query 25343 AGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| || |||||||| | ||| | ||||| Sbjct 146 GCTGATTACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTT 103 >seq131271 Length=1147 Score = 100 bits (110), Expect = 3e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 25163 CAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAA 25222 |||||| ||| |||||| | ||||| || ||| |||| ||||| | || || |||| Sbjct 94 CAATTATACAG-ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAG 152 Query 25223 GTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATA 25282 || || | ||| ||||| || | || ||| ||||||| || || || || || Sbjct 153 GTTGAGAACTCCGACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGG-ATT 211 Query 25283 CCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTC 25342 || || ||||| ||||| | |||| | || |||||||| ||||||| | ||| | Sbjct 212 CCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT 271 Query 25343 AGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| || |||||||| | ||| | ||||| Sbjct 272 GCTGATTACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTT 315 >seq20754 Length=265263 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| ||||| ||||| || || ||||||| | ||||| || ||| Sbjct 216606 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTC 216547 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| ||||| | ||||| ||| || || || |||||||| || || || | Sbjct 216546 A-GATACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 216488 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || | || | | || |||||||| || |||| || | | ||||||| Sbjct 216487 AGCAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGATTACA 216428 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || ||||| ||| ||||||| ||| | | |||| ||||| Sbjct 216427 ATATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 216379 >seq22395 Length=162664 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||||||| ||| | || || | ||||| || | Sbjct 27316 ATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTCG 27257 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || |||||| ||||| || ||||| ||||| || ||| Sbjct 27256 GACACAATTGATAATGTTAAGGCAAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCAG 27197 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| || || || ||| | ||||||| |||| | ||||| || Sbjct 27196 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACACTGGCTGATTATAAC 27137 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||||||| |||| | || | ||||||||||| || Sbjct 27136 ATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 27090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||| |||||||| || || || ||||| ||||| |||| | || |||||| | ||| Sbjct 110385 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 110326 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCA 25377 |||| || | | || ||||| ||||||||||| ||||||||| |||| Sbjct 110325 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCA 110276 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 25147 TTATATAAGTAGTTT---TCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGG 25203 ||||||| | ||||| | ||||| | ||||| | ||||| ||||| ||||| || Sbjct 27802 TTATATAGG-AGTTTGGTTTGATTAATACAGATGCAGATCTTTGTTAAAACCTTAACTGG 27744 Query 25204 AAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAAT 25263 |||| | ||||| | ||||| ||| | || || || || | || || ||||| Sbjct 27743 AAAAACCATCACACTGGAAGTTGAAAGCTCGGACACCATAGACAATGTTAAGGCGAAAAT 27684 Query 25264 TACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACT 25323 || ||||||||||| || || |||||||| || || || | | || || ||| | Sbjct 27683 ACAAGACAAAGAGGGTATCCCACCGGATCAGCAGAGGCTGATATTTGCAGGGAAGCAATT 27624 Query 25324 CGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCAC 25371 ||||||| | | | || ||||| ||||||||||| || || || Sbjct 27623 GGAAGATGGGCGTACTCTCGCAGATTATAATATTCAAAAGGAGTCAAC 27576 >seq10275 Length=89473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| ||||||| ||| | ||||| | ||||| ||| | Sbjct 10669 CATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTC 10610 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| ||||| || | || || ||||| ||||||||||| || || ||||| || Sbjct 10609 CGACACTATTGATAACGTTAAGGCGAAAATCCAGGATAAAGAGGGAATCCCACCCGACCA 10550 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| || || | | ||| || ||||| ||||| | ||| || |||||||| Sbjct 10549 GCAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGCCGAACCCTCGCTGATTACAA 10490 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || || || ||| |||| || || Sbjct 10489 CATCCAGAAGGAGTCTACCCTTCACTTGGT 10460 >seq57534 Length=59227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | |||||||| | ||||| |||| ||||| | Sbjct 10977 ATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 10918 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | |||||| ||||| || || || || || || || |||||| Sbjct 10917 GACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 10858 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | || |||||| || || || || | | | | || ||||||||| Sbjct 10857 CAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACTCTCGCCGATTACAAC 10798 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || ||||| ||| |||| || || Sbjct 10797 ATCCAGAAGGAATCTACCCTTCACTTGGT 10769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439922364126240