Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq131271 104 2e-17 seq19970 100 2e-16 seq19239 91.5 1e-13 seq22395 89.7 4e-13 >seq131271 Length=1147 Score = 104 bits (114), Expect = 2e-17 Identities = 180/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 106236 TTTGTCATT-TATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGAC 106294 ||| ||||| ||| | | || | |||||||| |||||||| ||| | ||||| ||||| Sbjct 80 TTTCTCATTGTATGCAATTATACAGATGCAAATCTTTGTTAAGACACTAACTGGAAAGAC 139 Query 106295 CATTACCGTGGAAAC--AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCC 106352 |||||| | || ||||| | ||| || ||| | | || ||| ||||||| Sbjct 140 CATTACACTCGAGGTTGAGAACTC--CGACACTATTGACAATGTTAAAACAAAAATTCAA 197 Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||| ||||| | | | |||||||||||| | |||| ||| || |||||| | ||| Sbjct 198 GACAAGGAAGGATTCCTCCA-GATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAA 256 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | | |||||||| || || || ||||| || || ||| | || ||| Sbjct 257 GATGGTCGAACACTTGCTGATTACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTTG 316 Query 106473 AGGTTACGAGGAGGATA 106489 | | || ||||| || Sbjct 317 CGTCTTCGCGGAGGTTA 333 >seq19970 Length=23264 Score = 100 bits (110), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 106236 TTTGTCATT-TATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGAC 106294 ||| ||||| ||| | | || | |||||||| |||||||| ||| | ||||| || || Sbjct 339 TTTCTCATTGTATGCAATTATACAGATGCAAATCTTTGTTAAGACACTAACTGGAAAAAC 280 Query 106295 CATTACCGTGGAAAC--AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCC 106352 |||||| | || ||||| | ||| || ||| | | || ||| ||||||| Sbjct 279 CATTACACTCGAGGTTGAGAACTC--CGACACTATTGACAATGTTAAAACAAAAATTCAA 222 Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||| ||||| | || |||||||||||| | |||| ||| || |||||| | ||| Sbjct 221 GACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAA 162 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | ||| | | |||||||| || || || ||||| || || ||| | || ||| Sbjct 161 GATGGTCGAACACTTGCTGATTACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTTG 102 >seq19239 Length=237608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || ||| || || ||||| |||| ||| || ||||| || ||| Sbjct 131944 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 131885 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| ||| |||||||| || || |||||||| ||||| || | || ||| Sbjct 131884 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTG 131825 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||||||| Sbjct 131824 AGGCTCAGAGGAGGA 131810 >seq22395 Length=162664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCCG 106317 ||||||||||||||||| || || ||||| || || || || ||||| ||| | || Sbjct 110706 ATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCG 110647 Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 | || | | | | | || || ||||||| ||||| || || | || ||||| Sbjct 110646 G--ATACGATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAGGGTATCCCACCTGATC 110589 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 | || ||| | |||| ||| || || |||||||||||| | |||| ||| ||||| | Sbjct 110588 AGCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATA 110529 Query 106438 ACATACAAAAAGAATCTACACTACA 106462 |||| || || ||||| || || || Sbjct 110528 ACATCCAGAAGGAATCCACCCTTCA 110504 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCC 106316 ||||||||| ||||||||||| ||||| || || || ||||| ||||| ||| | | Sbjct 110935 AATGCAAATCTTTGTTAAAACCTTGACCGGGAAAACAATTACATTGGAAGTTGAGAGCTC 110876 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || | || ||| | || || |||||| || || ||||| | || || Sbjct 110875 GGACA--CTATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGAC 110818 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 ||||||||||| |||| |||||| || ||||| |||||| ||| ||| ||||| Sbjct 110817 CAACAAAGGCTGATTTTTGCGGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTAT 110758 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGT 106468 || || ||||| || || ||||| || |||| Sbjct 110757 AATATTCAAAAGGAGTCAACACTCCACCTAGT 110726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397771372473056