Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq508016 149 9e-30 >seq508016 Length=803 Score = 149 bits (164), Expect = 9e-30 Identities = 349/522 (67%), Gaps = 10/522 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| |||||| | || |||| || Sbjct 257 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 315 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || ||||| ||||| | | || || ||||||| | || | | Sbjct 316 TGGACTGCTGAGGAAGTCGATTTATCTTCAGATACCCGTCACTGGGAAACCCTAACTCCC 375 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | ||| | |||||||||| || ||||| ||||||| |||||||| || |||||||| Sbjct 376 GGCGAAAGGCATTTCATCACTCATGTCCTTGCCTTTT-TCGCCGCCTCAGACGGCATCGT 434 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 || ||||| ||||| | || |||||||| |||||| | | ||||| ||| || Sbjct 435 TTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCGGAGGCGCGTGCTTT 494 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||| ||||| ||||| || ||||||||||| || || | ||| || || | || Sbjct 495 CTACGGCTTCCAAATCGCGATTGAAAACATCCATTCCGAGATGTACAGTCTGCTTCTAGA 554 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 | ||| |||||||| | | || || | | || ||||| | || || | || Sbjct 555 GTCGTACATCAAGGACTCTGAAGAAAAAAGCAGATTGTTCCGCGCAGTTGAGACTATCCC 614 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| ||||| | ||||| | |||||| || || ||| || Sbjct 615 CTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATC------GACGGTTCCGAAAC 668 Query 1456173 -TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||||| ||||| | || | ||||| | || || || || ||||| || || || || Sbjct 669 ATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTTTCTGGAAGCTT 728 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| || || || ||| | || ||||| || | ||||| || Sbjct 729 CTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7088148896232334