Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05]
929,607 sequences; 2,689,351,490 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq508016 150 2e-31
seq908713 113 6e-20
seq14524 105 9e-18
>seq508016
Length=803
Score = 150 bits (166), Expect = 2e-31
Identities = 368/547 (67%), Gaps = 12/547 (2%)
Strand=Plus/Minus
Query 39652 AATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT 39711
||| || ||||| || || || | ||||||||||| || |||||||| | ||| |||||
Sbjct 795 AATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATAT 736
Query 39712 GGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCT 39770
||| || ||| | |||||||| || || ||||| || ||||||||||| | | ||
Sbjct 735 AGCA-CAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCT 677
Query 39771 CTCCGTAACTTGTATCATTAT-GT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTA 39827
| || || | || || | || ||||| | ||||| | || ||||||| |
Sbjct 676 C--CGCAAAT-GTTTCGGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAA 620
Query 39828 CACAAGGCATTGTTTCTATAGCATTAAAGAGATAATG--TTTTTCATCACTATCTTTAAC 39885
|||| || || || || | || || | || || |||||| ||| || || |
Sbjct 619 CACAGGGGATAGTCTCAACTGCGCGGAACA-ATC-TGCTTTTTTCTTCAGAGTCCTTGAT 562
Query 39886 ATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAA 39945
|| | |||| | |||||| ||||| || |||||||||||||||||||| || || ||
Sbjct 561 GTACGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAA 502
Query 39946 TCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATT 40005
||||| ||| | || || | || ||| || ||| || ||| | || | ||
Sbjct 501 GCCGTAGAAAGCACGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTT 442
Query 40006 TTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTT 40065
||| || || || || ||||| ||||| || | ||||| | || |||| |
Sbjct 441 TTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCT 382
Query 40066 TTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 40125
||| |||| || | | | ||||| | | ||||| |||| ||| ||||| |||||
Sbjct 381 TTCGCCGGGAGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGC 322
Query 40126 TGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGG 40185
||||| || || || || ||||||||||| | ||| || | | ||||| |||||
Sbjct 321 AGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGG 262
Query 40186 AAAAATA 40192
|| |||
Sbjct 261 GAACATA 255
>seq908713
Length=735
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | |||| ||||||| |||| | || | ||||| || ||||| |||
Sbjct 270 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATTGGTATAATTCCA 329
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | ||||| |||||| ||||||||| || | | |||||||| | ||||
Sbjct 330 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 389
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || |||||||| || ||| || | |||||| || | |||||||||||
Sbjct 390 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 449
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| || ||||| ||| ||||| | ||| || ||||||
Sbjct 450 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 491
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||| | || ||||| || |||||||||||| ||| ||| | || ||
Sbjct 587 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 646
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|| || | || || ||||| ||||| || || ||||| | | || | ||||||
Sbjct 647 ATAAGTCTTGATGGCAGATTCGATATCATCCTTGTGGATTCCAACAGAAACTCTCATCAA 706
Query 70110 CATATGCTGAGGTCGTTCTAC 70130
|||||| || || | ||||||
Sbjct 707 CATATGTTGTGGCCTTTCTAC 727
>seq14524
Length=135311
Score = 105 bits (116), Expect = 9e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||||||||| |||||||| |||||||||||| || ||| | || ||
Sbjct 88910 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 88969
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|||||| | || | ||||| | ||| || || || || | | || | |||||
Sbjct 88970 GTATGTCTTGATGACAGATTCAACATCATCCTTGTGGATCCCAACAGATACTCTCATCAG 89029
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || || || | |||||| |||| | || || || ||||| || | || ||
Sbjct 89030 CATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAAG 89089
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || ||||| || | || ||||||||| || || || ||
Sbjct 89090 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 89137
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | ||||| ||||||| ||| | || | |||||| |||| ||| |||
Sbjct 88489 CCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCCA 88548
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||||||| ||| ||||| || | || || || || | |||
Sbjct 88549 TTTGATGTCCCATTTGTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGAA 88608
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || ||||| || || ||| || | |||||| || | || |||||||||
Sbjct 88609 ACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATATA 88668
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| || || || ||| ||||| | || || ||||||
Sbjct 88669 CCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 88710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 678926859639480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |