Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq508016 150 2e-31 seq908713 113 6e-20 seq14524 105 9e-18 >seq508016 Length=803 Score = 150 bits (166), Expect = 2e-31 Identities = 368/547 (67%), Gaps = 12/547 (2%) Strand=Plus/Minus Query 39652 AATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT 39711 ||| || ||||| || || || | ||||||||||| || |||||||| | ||| ||||| Sbjct 795 AATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATAT 736 Query 39712 GGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCT 39770 ||| || ||| | |||||||| || || ||||| || ||||||||||| | | || Sbjct 735 AGCA-CAGAAGCTTCCAGAAAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCT 677 Query 39771 CTCCGTAACTTGTATCATTAT-GT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTA 39827 | || || | || || | || ||||| | ||||| | || ||||||| | Sbjct 676 C--CGCAAAT-GTTTCGGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAA 620 Query 39828 CACAAGGCATTGTTTCTATAGCATTAAAGAGATAATG--TTTTTCATCACTATCTTTAAC 39885 |||| || || || || | || || | || || |||||| ||| || || | Sbjct 619 CACAGGGGATAGTCTCAACTGCGCGGAACA-ATC-TGCTTTTTTCTTCAGAGTCCTTGAT 562 Query 39886 ATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAA 39945 || | |||| | |||||| ||||| || |||||||||||||||||||| || || || Sbjct 561 GTACGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAA 502 Query 39946 TCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATT 40005 ||||| ||| | || || | || ||| || ||| || ||| | || | || Sbjct 501 GCCGTAGAAAGCACGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTT 442 Query 40006 TTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTT 40065 ||| || || || || ||||| ||||| || | ||||| | || |||| | Sbjct 441 TTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCT 382 Query 40066 TTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 40125 ||| |||| || | | | ||||| | | ||||| |||| ||| ||||| ||||| Sbjct 381 TTCGCCGGGAGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGC 322 Query 40126 TGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGG 40185 ||||| || || || || ||||||||||| | ||| || | | ||||| ||||| Sbjct 321 AGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGG 262 Query 40186 AAAAATA 40192 || ||| Sbjct 261 GAACATA 255 >seq908713 Length=735 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | ||||| || ||||| ||| Sbjct 270 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATTGGTATAATTCCA 329 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| |||||| ||||||||| || | | |||||||| | |||| Sbjct 330 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 389 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 390 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 449 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | ||| || |||||| Sbjct 450 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| ||| ||| | || || Sbjct 587 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 646 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| || || ||||| | | || | |||||| Sbjct 647 ATAAGTCTTGATGGCAGATTCGATATCATCCTTGTGGATTCCAACAGAAACTCTCATCAA 706 Query 70110 CATATGCTGAGGTCGTTCTAC 70130 |||||| || || | |||||| Sbjct 707 CATATGTTGTGGCCTTTCTAC 727 >seq14524 Length=135311 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||||||||| |||||||| |||||||||||| || ||| | || || Sbjct 88910 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 88969 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||| | || | ||||| | ||| || || || || | | || | ||||| Sbjct 88970 GTATGTCTTGATGACAGATTCAACATCATCCTTGTGGATCCCAACAGATACTCTCATCAG 89029 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| |||| | || || || ||||| || | || || Sbjct 89030 CATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAAG 89089 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| || || || || Sbjct 89090 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 89137 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | ||||| ||||||| ||| | || | |||||| |||| ||| ||| Sbjct 88489 CCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCCA 88548 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||| ||||| || | || || || || | ||| Sbjct 88549 TTTGATGTCCCATTTGTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGAA 88608 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| || | || ||||||||| Sbjct 88609 ACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATATA 88668 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || || || ||| ||||| | || || |||||| Sbjct 88669 CCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 88710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 678926859639480