Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq20754 93.3 4e-14 seq22395 91.5 1e-13 seq10275 84.2 2e-11 >seq20754 Length=265263 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||||||||| || | | ||||| | || || ||||| ||||| Sbjct 215953 GTGGATTCCTTTTGAATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACCA 216012 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| ||||| || || | || |||||||| || ||| ||| Sbjct 216013 GCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTGGCCTTC 216072 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | || ||||| | ||| || | || || |||| |||| Sbjct 216073 ACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTT 216132 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || ||||| || |||||| || Sbjct 216133 TTGACAAATATCTGCATACCT 216153 >seq22395 Length=162664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || ||||||| |||||| || | | ||| | || ||||||||||| || Sbjct 110965 CGTTGACTCCTTTTGAAAATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCC 111024 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || | ||| || ||||| || || | ||| ||||| || || ||| ||| Sbjct 111025 TGCAAAGATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTGTCCTGAATTTTGGCTTT 111084 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||||| |||||||| |||||||||| ||||| ||||| || Sbjct 111085 AACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGT 111144 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 111145 CTTCACAAATATCTGCAT 111162 >seq10275 Length=89473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || ||||| || ||||||||| || ||| || ||||||| Sbjct 10916 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCTTC 10974 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | || | | || || ||||| || | || ||||| || Sbjct 10975 GAGCTGCTTTCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTG 11034 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | | || | |||||| | | |||||| || || ||||| | || Sbjct 11035 AATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTCTT 11094 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| || ||||| ||||| Sbjct 11095 TCCAGTTAGGGTTTTAACGAAGATCTGCAT 11124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420120069462984