Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8121 120 4e-22 seq254151 107 2e-18 seq14524 102 1e-16 seq14338 96.9 4e-15 >seq8121 Length=344380 Score = 120 bits (132), Expect = 4e-22 Identities = 248/366 (68%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | || || ||||| | || | |||||| || || | ||||||||| || Sbjct 277517 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 277576 Query 11512 AATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 ||| || | | ||||| | || || ||| |||||||| || ||||| | ||| || Sbjct 277577 AATGACAATGACTCCAGTGT--TTCCAGTGAAA-CCATCCATTTCAGTGAGAAGTTGGTT 277633 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 || ||| || ||||| ||||||||| | | ||||| | | |||| | || || Sbjct 277634 AAGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAAC 277693 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||||||||||||||| ||||| | | | ||| |||||| || | | || | Sbjct 277694 AGCATCAATCTCATCAATAAAGACTAAAGAAGGTGAATTTTCCTTTGCCTTGTTGAATAA 277753 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 || | ||| || || |||||||||||||||||||| || || | || ||||| Sbjct 277754 GTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAACTCTGAACCAGAGAG 277813 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | |||||| || | || ||| || ||||| || || || | ||||| || || Sbjct 277814 AGATAAGAATGGAACCTCTGCTTCTCCGGCGATCGCCTTAGCTAGCAATGTCTTCCCTGT 277873 Query 11809 ACCTGG 11814 ||||| Sbjct 277874 CCCTGG 277879 >seq254151 Length=6888 Score = 107 bits (118), Expect = 2e-18 Identities = 280/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 4586 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 4645 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 || ||||| || || | || ||| || | || ||||| || |||||||| || | | Sbjct 4646 CCGTCCATTTCTGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--CCTC 4703 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 4704 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 4763 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || ||||| || || | ||| || |||||||||| Sbjct 4764 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCTACACCAACAA 4823 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| ||||| | || | || | || || ||||| ||| | |||||| || Sbjct 4824 ACATCTCAACAAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 4882 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || |||||||| || ||||| || ||| | ||||| | ||| Sbjct 4883 ATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 4942 Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || | | | ||||| | || | |||||||| | ||| | ||| || || | ||| Sbjct 4943 GGAATACGAGCCCCCACTGCGGTAA-ACCTCTCGGGCTTCTTCAAAAATTCTACGACCTC 5001 >seq14524 Length=135311 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || |||||||| || |||||||| || | ||||| | ||| ||| ||||| | ||| Sbjct 88899 TGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 88958 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | |||||||| | |||||| |||| || ||| |||||| || | | Sbjct 88959 GACATCAAATGGTATGTCTTGATGACAGATTCAACATCATCCTTGTGGATCCCAACAGAT 89018 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 || | ||| | ||||| ||||| |||| | | | || | || | || | || || Sbjct 89019 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 89077 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | ||||||||||||||| |||||||||| || ||||| |||| Sbjct 89078 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 89122 >seq14338 Length=69158 Score = 96.9 bits (106), Expect = 4e-15 Identities = 270/408 (66%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||||| || || || |||||||||||| | Sbjct 28648 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 28704 Query 11599 CATACCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 ||| || ||| ||| | |||| | || || ||||||||||||||||| || || Sbjct 28705 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 28761 Query 11653 AATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 |||||| || | ||| | || | ||||| | ||| | || || || |||| Sbjct 28762 AATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 28820 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 |||| ||||||| ||| ||||| | || || | || || ||||| ||| || | Sbjct 28821 CACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 28880 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 |||| || | |||| || | || ||||| || ||||| || ||| | | ||| Sbjct 28881 CACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTACCAGGTGGTCCCACTAAAAGAC 28940 Query 11832 CGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA 11891 ||| || ||||| ||||| || |||| | || || | || | ||||| | Sbjct 28941 ACCCTTTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCAA 29000 Query 11892 CAATCTCTT-CAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 ||| |||| ||| | || | |||||| ||| || |||||||| Sbjct 29001 CAACTTCTTGCAACTCCAAC-TTGGCCTGATCAGCACCAGCAACATCA 29047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734213207200