Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq178713 82.4 9e-11 >seq178713 Length=25292 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| ||||||||||||||||| || || || || | ||||||||| || Sbjct 19835 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 19778 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || || ||||| ||||| || || || || Sbjct 19777 CCTCCCATTCCTGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 19718 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | |||||| || || ||||| Sbjct 19717 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 19659 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||||||| ||| ||||| | | || | |||| || || || || || |||||| Sbjct 19658 AACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTCACC 19599 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || ||||| || || || ||| Sbjct 19598 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGT 19559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611248928862920