Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20otophora_20[genbank_20GCA_5F000715115.1_202014-06-05] 929,607 sequences; 2,689,351,490 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq254151 136 5e-27 seq178713 118 1e-21 seq14338 118 1e-21 seq8121 91.5 2e-13 seq14524 86.0 7e-12 >seq254151 Length=6888 Score = 136 bits (150), Expect = 5e-27 Identities = 275/399 (69%), Gaps = 12/399 (3%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 4555 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 4614 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||| ||||| |||||||| |||||||| Sbjct 4615 AACAACTATTATACCAGTATTTCCTT--CGAAACCGTCCATTTCTGTCAATAGTTGGTTC 4672 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 4673 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 4730 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAG 9760 | |||||||| ||||||| || || ||||| || |||||| || ||| ||| Sbjct 4731 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 4789 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 4790 AGATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 4849 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 4850 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCC 4908 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 ||||| || ||| | || || ||||| |||||| Sbjct 4909 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAAT 4947 >seq178713 Length=25292 Score = 118 bits (130), Expect = 1e-21 Identities = 199/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 19835 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 19778 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || || | | ||| | ||||| ||||||||||||||||| || || ||| Sbjct 19777 CCTCCCATTCCTGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 19718 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| || |||| || | ||||| ||| || | || || || Sbjct 19717 CAAGGCGC--TTTCGACTTCGCCTTCTCGAACAAATCCCT--CACTCTAGAAGCTCCAAC 19662 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 19661 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 19602 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 19601 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 19560 >seq14338 Length=69158 Score = 118 bits (130), Expect = 1e-21 Identities = 254/377 (67%), Gaps = 16/377 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| |||||||| ||||| |||||||| || |||| |||||||| | Sbjct 28648 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 28704 Query 9673 CATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 28705 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 28761 Query 9727 GATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 || || || ||||| || || ||||| | ||||| ||| | || ||| Sbjct 28762 AATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCC 28819 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 ||||| ||||||| ||| ||||| | || || | |||| || || || ||| | Sbjct 28820 ACACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCC 28879 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| || | |||| || | ||| |||||||| ||||| || ||| | | || Sbjct 28880 TCACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTACCAGGTGGTCCCACTAAAAGA 28939 Query 9905 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||| ||||| || || || ||| | ||||| | || | ||||| Sbjct 28940 CACCCTTTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCA 28999 Query 9965 ACAATTTCTTCCAATTC 9981 |||| ||||| ||| || Sbjct 29000 ACAACTTCTTGCAACTC 29016 >seq8121 Length=344380 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 277517 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 277576 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 ||||||| | || |||||| | ||||||||||| || || | |||||||||| Sbjct 277577 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCAGTGAGAAGTTGGTTA 277634 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | || || || | ||||||||| | | ||||| | | |||| | || || Sbjct 277635 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 277694 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||||||||||||||| ||||| | | ||| |||||| || | || | Sbjct 277695 GCATCAATCTCATCAATAAAGACTAAAGAAGGTGAATTTTCCTTTGCCTTGTTGAATAAG 277754 Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 9807 |||| || || || | || |||||||||||||||||||| || || Sbjct 277755 TCCC-TA-ACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 277798 >seq14524 Length=135311 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 ||||||| || | || ||| |||||| ||||||||||||||| | || || | || | Sbjct 89125 AGAGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAG 89066 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 || | ||| | | |||| ||||| ||||| | ||| | || | | || || Sbjct 89065 ATTC-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGAT 89007 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 || ||| || |||| |||||| | |||||||| | |||||| ||| | ||| Sbjct 89006 CCACAAGGATGATGTTGAATCTGTCATCAAGACATACCATTTGATGTCTCAACGATGGTT 88947 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| ||| | ||||| | || |||||||| || |||||||| ||| Sbjct 88946 CACTCATGCATCTCCAACATTATTTAATGCTGGAACTCCAAGACCTCAA 88898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576483258468680